Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq700 104 3e-17 seq551 104 3e-17 seq244 104 3e-17 seq112 104 3e-17 seq5 104 3e-17 seq45 98.7 1e-15 seq54 91.5 2e-13 >seq700 Length=1122494 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 ||| |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||| Sbjct 934618 CCACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 934559 Query 11785 ATTCCCCGACGAGGAGG 11801 ||||||||||| ||||| Sbjct 934558 ATTCCCCGACGGGGAGG 934542 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 934614 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 934555 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 934554 CCCGACGGGGAG 934543 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 934543 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 934602 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 934603 TACTAACGAGGA 934614 >seq551 Length=1446871 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 309144 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 309085 Query 8718 CCCGACGAGGAGCAG 8732 ||||||| |||| || Sbjct 309084 CCCGACGGGGAGGAG 309070 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 309145 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 309086 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 309085 CCCCGACGGGGAGG 309072 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 309073 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 309132 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 309133 TACTAACGAGGA 309144 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| ||||||||||| ||||| |||| |||| | ||||||||||||||||||||| Sbjct 318641 TCCTCGGAAGTATAGTGGTGAGTATCCCCGCTTGTCACGCGGGAGACCGGGGTTCGATTC 318700 Query 8718 CCCGACGAGGAG 8729 || ||||||||| Sbjct 318701 CCTGACGAGGAG 318712 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 ||||||||| |||| |||||||||||||||||| | ||||| |||||||| | ||||||| Sbjct 318712 CTCCTCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGACAAGCGGGGATACTCACCACTA 318653 Query 139413 TACTAACGAGGA 139424 |||| |||||| Sbjct 318652 TACTTCCGAGGA 318641 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| ||||||||||| ||||| |||| |||| | ||||||||||||||||||||| Sbjct 318641 TCCTCGGAAGTATAGTGGTGAGTATCCCCGCTTGTCACGCGGGAGACCGGGGTTCGATTC 318700 Query 11789 CCCGACGAGGAGG 11801 || |||||||||| Sbjct 318701 CCTGACGAGGAGG 318713 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||| ||| ||| ||||| || | ||||| | ||||||||||||||||| ||| Sbjct 317037 TCCTCGTTAGTGTAGGGGTGAGTATCCCTGCCTGTCACGCGGGAGACCGGGGTTCGCTTC 317096 Query 8718 CCCGACGAGGAGC 8730 || ||||||| || Sbjct 317097 CCTGACGAGGGGC 317109 >seq244 Length=2591211 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1919496 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1919555 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 1919556 CCCGACGGGGAG 1919567 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 1919496 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1919555 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 1919556 CCCGACGGGGAG 1919567 Score = 100 bits (110), Expect = 4e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 1920716 TTCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 1920657 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 1920656 CCCCGACGGGGAG 1920644 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1919567 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1919508 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1919507 TACTAACGAGGA 1919496 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1920715 TCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1920656 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 1920655 CCCGACGGGGAG 1920644 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1920644 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1920703 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1920704 TACTAACGAGGA 1920715 >seq112 Length=3621002 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 ||| |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||| Sbjct 3478373 CCACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 3478314 Query 11785 ATTCCCCGACGAGGAGG 11801 ||||||||||| ||||| Sbjct 3478313 ATTCCCCGACGGGGAGG 3478297 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 3478369 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3478310 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 3478309 CCCGACGGGGAG 3478298 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 3478298 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3478357 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 3478358 TACTAACGAGGA 3478369 >seq5 Length=7401140 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 11726 CCAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 ||| |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||| Sbjct 622480 CCACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 622539 Query 11785 ATTCCCCGACGAGGAGG 11801 ||||||||||| ||||| Sbjct 622540 ATTCCCCGACGGGGAGG 622556 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 622484 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 622543 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 622544 CCCGACGGGGAG 622555 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 626666 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 626725 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 626726 CCCGACGGGGAG 626737 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 626666 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 626725 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 626726 CCCGACGGGGAG 626737 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 622555 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 622496 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 622495 TACTAACGAGGA 622484 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 626737 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 626678 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 626677 TACTAACGAGGA 626666 >seq45 Length=4708497 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1249165 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1249224 Query 8718 CCCGACGAGGAG 8729 ||||| | |||| Sbjct 1249225 CCCGATGGGGAG 1249236 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || |||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||| Sbjct 1249162 CACTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 1249221 Query 11786 TTCCCCGACGAGGAG 11800 |||||||| | |||| Sbjct 1249222 TTCCCCGATGGGGAG 1249236 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| | ||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1249236 CTCCCCATCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1249177 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1249176 TACTAACGAGGA 1249165 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||| ||||||||||| ||||| |||| ||||| | ||||| |||||||| || Sbjct 1779311 TACTCCTCGTCAGTATAGTGGTAAGTATCCCCGCCTGTCACGTGGGAGCCCGGGGTTTGA 1779252 Query 8715 TTCCCCGACGAGGAG 8729 ||||| |||| |||| Sbjct 1779251 TTCCCTGACGGGGAG 1779237 >seq54 Length=4510698 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||| | ||||| |||| ||||| | |||||| |||||||||||||| Sbjct 1177726 TCCTCGTTAGTATAGTGATAAGTATCCCCGCCTGTCACGCGGGAG-CCGGGGTTCGATTC 1177784 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 1177785 CCCGACGGGGAG 1177796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/72 (89%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||| || |||| |||| ||||| | |||||| |||||||||||||| Sbjct 1177726 TCCTCGTTAGTATAGTGATAAGTATCCCCGCCTGTCACGCGGGAG-CCGGGGTTCGATTC 1177784 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 1177785 CCCGACGGGGAG 1177796 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| ||||||||||| |||||| | |||| |||||||| | | ||||| Sbjct 1177796 CTCCCCGTCGGGGAATCGAACCCCGG-CTCCCGCGTGACAGGCGGGGATACTTATCACTA 1177738 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1177737 TACTAACGAGGA 1177726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652768768062480