Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq780 143 3e-29 seq5 138 1e-27 seq718 86.0 6e-12 >seq780 Length=1004500 Score = 143 bits (158), Expect = 3e-29 Identities = 157/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| ||| || ||| | | | || || |||| Sbjct 815403 ATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCTAGCT 815461 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || || |||||||| ||||| ||||| Sbjct 815462 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCT 815521 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| ||||||| || |||| ||||| ||| ||||||| Sbjct 815522 TAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCGG 815581 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||||||| || ||||| ||||||||| Sbjct 815582 TCAGAGTCTTCACGAAGATCTGCATG 815607 Score = 132 bits (146), Expect = 5e-26 Identities = 151/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 815637 GGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCTAGCTGCTTGC 815695 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || |||||||| ||||| |||||| || Sbjct 815696 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCT 815755 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || |||| ||||| ||| ||||||||||| | Sbjct 815756 TCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGG 815815 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 815816 TCTTCACGAAGATCTGCATG 815835 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| ||| || ||| | | | || || |||| Sbjct 815175 ATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCTAGCT 815233 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || || |||||||| ||||| ||||| Sbjct 815234 GCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCT 815293 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| | Sbjct 815294 TAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAG 815353 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || || ||||||||| Sbjct 815354 TCAGGGTCTTCACAAAGATCTGCATG 815379 >seq5 Length=7401140 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| |||||||| || ||||| || || ||| | | | || || |||||||| | Sbjct 630459 GGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTC 630401 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || ||||| |||||||| |||||| || Sbjct 630400 CAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCT 630341 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| || | |||| ||| ||||||||||| | Sbjct 630340 TCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGGG 630281 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 630280 TCTTCACGAAGATCTGCATG 630261 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| |||||||| ||| || ||| | | | || || ||||| || | Sbjct 630687 GGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCTAGCTGTTTCC 630629 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || |||||||| |||| |||||| || Sbjct 630628 CAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGGATCTTGGCCT 630569 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||||||||| |||| |||||||| |||||||| || | Sbjct 630568 TCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTGCCGGTTAGGG 630509 Query 133642 TTTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 630508 GCTTCACGAAGATCTGCATG 630489 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| |||||||| ||| || ||| | | | || || ||||| || | Sbjct 630915 GGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCTAGCTGTTTCC 630857 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || |||||||| |||| |||||| || Sbjct 630856 CAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGGATCTTGGCCT 630797 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||||||||| |||| |||||||| |||||||| || | Sbjct 630796 TCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTGCCGGTTAGGG 630737 Query 133642 TTTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 630736 GCTTCACGAAGATCTGCATG 630717 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| |||||||| ||| || ||| | | | || || ||||| || | Sbjct 631143 GGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCTAGCTGTTTCC 631085 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || |||||||| |||| |||||| || Sbjct 631084 CAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGGATCTTGGCCT 631025 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||||||||| |||| |||||||| |||||||| || | Sbjct 631024 TCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTGCCGGTTAGGG 630965 Query 133642 TTTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 630964 GCTTCACGAAGATCTGCATG 630945 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| |||||||| ||| || ||| | | | || || ||||| || | Sbjct 631371 GGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCTAGCTGTTTCC 631313 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || |||||||| |||| |||||| || Sbjct 631312 CAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGGATCTTGGCCT 631253 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||||||||| |||| |||||||| |||||||| || | Sbjct 631252 TCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTGCCGGTTAGGG 631193 Query 133642 TTTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 631192 GCTTCACGAAGATCTGCATG 631173 >seq718 Length=1082811 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || || || | |||||| |||||||| ||||| ||||| ||||| || | Sbjct 692980 TGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 693039 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| | ||| || | |||||| ||||||||||| || Sbjct 693040 TGCTCTTCCGGTTACAAGAGTCCTTATACAGCATGTAAGG 693079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483364499605080