Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq586 158 1e-33 seq997 136 5e-27 >seq586 Length=1369653 Score = 158 bits (174), Expect = 1e-33 Identities = 414/623 (66%), Gaps = 19/623 (3%) Strand=Plus/Minus Query 176975 CACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAG 177034 ||| || ||||||| || | | || | ||||| || || || |||| |||| || || Sbjct 37693 CACATGTATGAAAGAGTTTGCTGGAATATAATTCTCATAGTTTTCTCGGGATGGGCCCAG 37634 Query 177035 TACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCT 177094 ||| | ||||| | || || | || || ||| |||||||| ||||| || || | Sbjct 37633 TACCACTGGTACAGACCCAGCAAGAAAAGCATTGTACAGTTTTTCCGTAATGTAATCTTT 37574 Query 177095 GTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGA--AGATAGTAGCGGGATGAAG 177152 ||| | ||||| ||||| | || || |||||||| | ||||||| | | || ||| Sbjct 37573 GTGGATTGAGTTTTCAAAGGAAAGGTAAAATTTACAAGTGGAGATAGTTG--GAATCAAG 37516 Query 177153 TCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTA 177212 | | ||| | ||| ||||| | | | | ||| || ||| || || |||| ||| Sbjct 37515 TTTTTATCATTCACATAGTCTCCAAATGCTTGCCCATAGGTATGGATTTCAATGTATTTG 37456 Query 177213 CTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCA 177271 || ||||| || || || || || | || || |||||| || || || ||||| Sbjct 37455 CTAAGCTCATTATAATA-CTTGACTCGAGCATGCTCAGGGTTCCAGTTACTTACAACCCA 37397 Query 177272 GCAAACTAACTTGCTCTTTGCGGGAACGGGATTCGATACTAA-TGCAGTGTCTCTGAGCG 177330 || || | ||| |||||||| | || ||| | ||| || ||| || | | Sbjct 37396 ACACACCAGCTT-CTCTTTGCTTG---GGACTTCAAATGTAAATGGAGTTGTACTAACCA 37341 Query 177331 TTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGA 177390 | | | ||||| ||||| |||||||| || || |||| ||| || || || | |||| Sbjct 37340 TCATGAAGCCATAAGGCACCTGAATATCTGAATCACGTCGGTAAGTCAAGGTCAAGTTGA 37281 Query 177391 AAAGGTTTTCTATACC----TTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATC 177446 |||||| ||| || || || | || || ||| | | || || || ||||||||| Sbjct 37280 AAAGGTGTTCAATGCCGCTCTTCTGTGGAG----TGTGAGTTGGAGACTCCAAGTTCATC 37225 Query 177447 CATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTT 177506 || ||||| || || || | |||||| | | | ||||| | || |||| || Sbjct 37224 CAGATCCATTTCTGGAATGGTGGTCTAGTCTGCTGAGGTAAATTAGTCAGATCCCAGCTG 37165 Query 177507 ATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGTAATAAACAGATCTGTCTACGGTA 177566 || ||||||||||||| || ||||||| || | ||| ||| | || | ||| | || Sbjct 37164 ATGTCTCTGTGGTGAATGAGAACGGCATGGGATCTGTTATATAATGAGCGGTCAATAGTC 37105 Query 177567 ACGTGACACGCACGTATGTTAAA 177589 | || ||| || | ||||| || Sbjct 37104 AGATGGCACCCATGGATGTTGAA 37082 >seq997 Length=681529 Score = 136 bits (150), Expect = 5e-27 Identities = 554/866 (64%), Gaps = 9/866 (1%) Strand=Plus/Minus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || || ||||| || || | ||| || ||| ||| |||| || | ||||||| Sbjct 24047 TCAAATTTGTTAGCAAAGAAGTGGTGT---TTCCACAACATCCCGTTTAAATCCCCCACC 23991 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || ||||| ||||| || || || || | || ||| || ||||| | || || | Sbjct 23990 CCAAACACACACACAGAACGGACATGAATTCCATGGCATGGTGGATAGGGAGCACCGTTA 23931 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 |||||||| ||| |||| |||||||| || || || | | || | |||||| || Sbjct 23930 AATACATCCCCTTCGAAGTACTGCCACTTCACAAATCTGGCAAGGGCATTCATGTCAGAA 23871 Query 162301 GTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTA 162360 || ||||| | || | || || || ||||| |||| | ||| || | |||| Sbjct 23870 ACATCATACTTATTGCTGGAAGAAACTGCACCTGGAACTTCCGGGATTCTTTGAATAGTA 23811 Query 162361 GCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACC 162420 ||||||| || ||| || || ||||| || || || | ||| || || || | || Sbjct 23810 GCCCACAAGTATTCATCAGGGCTATATGTATCTTTAGCCCATTCAATAAATTTAAGGATT 23751 Query 162421 GTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCA 162480 | | | | || | || | || | ||| | |||| ||| || || || ||| Sbjct 23750 TTGCTGTTTTCTAACACATACGCTACAAATCTCCTACTAACAACAAAATAGGCACTGCCA 23691 Query 162481 GAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATT 162540 ||||| | ||| | | | ||| || | | ||||||| ||||||||| | | || Sbjct 23690 GAAAAAATAGGTGTACTAAGAGGTGGTAGTTTTTTGTCTACACCCGTGTTTTTCAGCTTT 23631 Query 162541 CCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATC-TTACTGGTAGACGGGTGTTC 162599 || || || | | | || |||| | | | || || | | || | | || Sbjct 23630 CCGTCAACAATTTCATAATGGTTTTTCCATC-GTACTTCTTTGTTTGGAGGCATTTTCTC 23572 Query 162600 GGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGT 162659 || |||| |||||| |||| || || |||| | || || || |||||| Sbjct 23571 AGTTTCTAAACTGTTTTCACCCTTTAAAGCTTTCAATTTCTCTACAATTTCCTCATTGGT 23512 Query 162660 CTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCC 162719 |||| ||||||||| |||| || ||||| || | ||||||||| || | | Sbjct 23511 TTTAATGGGAAAGTCCATGCCACAAAGATTTATCAAATATTTCCATTTTGTATTCCTCCT 23452 Query 162720 GTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGAC 162779 ||| || || | | ||||| || || || || || | ||||| || || ||||| || Sbjct 23451 GTAGAGGTCTTTCATGCAGTTAAGGTCTGCTTGTACCCTGCTCCATGATGCATACACTAC 23392 Query 162780 GCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGC 162839 || ||| |||| | ||||||||| || ||||| || | || ||| |||| | Sbjct 23391 ACTTTCCGTTTGGCTGGCAATAAAGACATTATCAAAACATGATGCAATTCCCTTCACTG- 23333 Query 162840 CAG--TGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGG 162897 ||| || || || | |||| | || || || | |||||| ||||||| | Sbjct 23332 CAGCCAGATAAGATTCAGGAGACTTT-TTGTCCACATGAATGCAGTAGTAATTCTGATGA 23274 Query 162898 GCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAA 162957 | ||||| | ||| || | |||||| ||||| || || || || | ||||| || ||| Sbjct 23273 GTATAGATTGACCTTAGAAGTCTCTCAAACATATCAATTTTGTGATAAACCACTATTGAA 23214 Query 162958 TACGCTATGGGGAACTCAGCCTCCTC 162983 || || || || || ||||| || || Sbjct 23213 TAGGCAATAGGAAATTCAGCTTCTTC 23188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578364634363200