Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq391 113 1e-21 seq136 105 2e-19 seq913 104 7e-19 seq121 100 9e-18 seq1 100 9e-18 seq1442 98.7 3e-17 seq975 98.7 3e-17 seq52 98.7 3e-17 seq5 98.7 3e-17 seq98 95.1 4e-16 seq50 95.1 4e-16 seq603 87.8 6e-14 seq1151 86.0 2e-13 >seq391 Length=1926348 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1078788 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1078847 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 1078848 CCGGGTTTCAGC 1078859 >seq136 Length=3397574 Score = 105 bits (116), Expect = 2e-19 Identities = 66/71 (93%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2292746 ATAGCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2292687 Query 2826 ACCCCGGGCTT 2836 | || ||| || Sbjct 2292686 ATCCTGGGTTT 2292676 Score = 100 bits (110), Expect = 9e-18 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 3221665 TGAAATAGCTCAGTTGGGAAAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCT 3221606 Query 2831 GGGCTTCAGC 2840 || |||||| Sbjct 3221605 AGGTTTCAGC 3221596 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1248892 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1248833 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1248832 CCGGGTTTCGGC 1248821 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||| | Sbjct 3205908 GCTGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCAAAAGGTCTCTGGTTCAATC 3205967 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 3205968 CTGGGTTT 3205975 >seq913 Length=780100 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 284532 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGCTCTAAAGGTCCTTGGTTCAATC 284473 Query 2829 CCGGGCTTCAGC 2840 || || |||||| Sbjct 284472 CCAGGTTTCAGC 284461 >seq121 Length=3551183 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| | Sbjct 62757 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGATGATCTAAAGGTCCCTGGAGCAATC 62698 Query 2829 CCGGGCTT 2836 |||||||| Sbjct 62697 CCGGGCTT 62690 >seq1 Length=8641424 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | Sbjct 12509 GCCGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGCTCTAAAGGTCCCTGGATCAATC 12450 Query 2829 CCGGGCTT 2836 || ||||| Sbjct 12449 CCAGGCTT 12442 >seq1442 Length=233916 Score = 98.7 bits (108), Expect = 3e-17 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2774 AGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| Sbjct 51755 AGTAGCTCAGTGGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGATCAATCCCGGG 51696 Query 2834 CTTCAGC 2840 |||| || Sbjct 51695 CTTCGGC 51689 >seq975 Length=701698 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| |||||||||||||||||||| ||||||||||||||||||||||||| | |||| | Sbjct 526728 GCTGGAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTTGATCAATC 526787 Query 2829 CCGGGCTTCAGC 2840 | ||||||| || Sbjct 526788 CTGGGCTTCGGC 526799 >seq52 Length=4615645 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 770116 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 770175 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 770176 CCGGGTTTCGGC 770187 >seq5 Length=7401140 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 626433 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 626492 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 626493 CCGGGTTTCGGC 626504 >seq98 Length=3830245 Score = 95.1 bits (104), Expect = 4e-16 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 194289 GAAATAGCTCAGTTGGGAGAGCATTAGATTGAAGATCTAAAGGTCCCTGGTTCAATCCCA 194348 Query 2832 GGCTT 2836 || || Sbjct 194349 GGTTT 194353 >seq50 Length=4648953 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||| |||||||||||||| |||||||| ||||||||||||| | Sbjct 3558827 GCTGAAATAGCTCAGTTGGACGAGCATTAGACTGACGATCTAAATGTCCCTGGTTCAATC 3558886 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3558887 CCGGGTTTCGGC 3558898 >seq603 Length=1336951 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||| |||||||| |||||||||||||||||||| |||||| ||| ||| | Sbjct 1022797 AAGTAGCTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAAGGGCCCTGGATCAGTCCCAG 1022738 Query 2833 GCTTCAGC 2840 |||||||| Sbjct 1022737 GCTTCAGC 1022730 >seq1151 Length=511323 Score = 86.0 bits (94), Expect = 2e-13 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||| |||||||||||||||||||||||||||| ||||||||||| | || || Sbjct 373078 AAATAGCTCAGGTGGGAGAGCATTAGACTGAAGATCTAAAAGTCCCTGGTTCGATCCTGG 373137 Query 2833 GCTTC 2837 | ||| Sbjct 373138 GTTTC 373142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847984851465