Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq270 167 3e-35 seq1233 163 4e-34 seq4 158 2e-32 seq844 107 3e-17 seq10 102 1e-15 seq1594 89.7 7e-12 >seq270 Length=2473950 Score = 167 bits (184), Expect = 3e-35 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| | || ||||| || ||||| Sbjct 1448201 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCG---GCATTTCGTCCAA--AG-CCATG 1448254 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||| ||| Sbjct 1448255 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 1448314 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 1448315 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 1448374 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1448375 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1448423 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || ||| ||||| Sbjct 1574482 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAAGCCATG 1574429 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||| ||| Sbjct 1574428 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 1574369 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 1574368 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 1574309 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1574308 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1574260 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || ||| ||||| Sbjct 1593384 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAAGCCATG 1593331 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||| ||| Sbjct 1593330 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 1593271 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 1593270 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 1593211 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1593210 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1593162 Score = 167 bits (184), Expect = 3e-35 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| | || ||||| || ||||| Sbjct 1613763 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCG---GCATTTCGTCCAA--AG-CCATG 1613710 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||| ||| Sbjct 1613709 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 1613650 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 1613649 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 1613590 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1613589 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1613541 Score = 167 bits (184), Expect = 3e-35 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| | || ||||| || ||||| Sbjct 1631363 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCG---GCATTTCGTCCAA--AG-CCATG 1631416 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||| ||| Sbjct 1631417 GGCATCATGAACTCCTTCGTGAACGACATTTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 1631476 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 1631477 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 1631536 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1631537 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1631585 Score = 161 bits (178), Expect = 1e-33 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||||||||| |||| | || ||||| || ||||| Sbjct 1487547 TACAAAGTGCTGAAGCAGGTGCACCCGGACACCG---GCATTTCGTCCAA--AG-CCATG 1487494 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||| ||| Sbjct 1487493 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 1487434 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 1487433 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 1487374 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1487373 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1487325 Score = 161 bits (178), Expect = 1e-33 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| |||| | || ||||| || ||||| Sbjct 1500155 TACAAGGTGCTGAAGCAGGTTCACCCGGACACCG---GCATTTCGTCCAA--AG-CCATG 1500102 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | ||||| ||| Sbjct 1500101 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGGGAGGCGTCCCGC 1500042 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | || ||||||||||||||||||||| Sbjct 1500041 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACCGCCGTGCGC 1499982 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 1499981 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1499933 >seq1233 Length=419359 Score = 163 bits (180), Expect = 4e-34 Identities = 143/178 (80%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| ||||||||||| || || ||||| || |||| ||||||| || |||| Sbjct 351905 AAGGCCATGAGCATCATGAACTCCTTCGTGAACGATGTGTTCGAGCGCATCGCCAGCGAG 351846 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || | |||||||||| | ||||||||||| ||| ||| || |||||| | ||||| Sbjct 351845 GCGGCGCGCCTGGCGCAGTACAACAAGCGCACCACCATCACCAGCCGCGAGGTGCAGACG 351786 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||||||| | ||| ||| || ||||||| ||||||||||||||||||||||| Sbjct 351785 GCCGTGCGCCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 351728 >seq4 Length=7559895 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 2322565 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 2322512 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 2322511 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 2322452 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || ||||||||| || ||| |||| ||||||||||| || ||||| Sbjct 2322451 CTGGCGCACTATAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCTGTGCGG 2322392 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 2322391 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGTACCA 2322343 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 2379709 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 2379762 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 2379763 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 2379822 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || ||||||||| || ||| |||| ||||||||||| || ||||| Sbjct 2379823 CTGGCGCACTATAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCTGTGCGG 2379882 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 2379883 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGTACCA 2379931 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 2386562 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 2386615 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 2386616 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 2386675 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || ||||||||| || ||| |||| ||||||||||| || ||||| Sbjct 2386676 CTGGCGCACTATAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCTGTGCGG 2386735 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 2386736 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGTACCA 2386784 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||| ||| |||| |||| || |||| ||||| Sbjct 2333930 TACAAGGTGCTGAAGCAGGTGCATCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 2333877 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 2333876 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 2333817 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || ||||||||| || ||| |||| ||||||||||| || ||||| Sbjct 2333816 CTGGCGCACTATAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCTGTGCGG 2333757 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 2333756 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGTACCA 2333708 >seq844 Length=884573 Score = 107 bits (118), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| ||| || |||| ||||| Sbjct 773158 TACAAGGTGCTGAAGCAGGTTCATCCCGACACCGGA-----ATC-TCTTCCAAGGCCATG 773211 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||| ||||| | || ||||| | | |||||| ||| Sbjct 773212 GGCATCATGAACTCCTTTGTCAATGACATTTTTGAGCGCATTGCCGGGGAGGCCTCTCGT 773271 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | | |||||||||| || ||| | || || || ||||| |||||||| Sbjct 773272 CTGGCACATTACAACAAGCGCTCAACCATCACTTCCCGGGAAATTCAGACAGCCGTGCGT 773331 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| ||| || || || || ||||||| Sbjct 773332 CTACTGCTGCCAGGGGAGCTGGCCAAGCATGCTGTATCTGAAGGCACCA 773380 >seq10 Length=6806094 Score = 102 bits (112), Expect = 1e-15 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 724977 ATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTG 725036 ||||||||||| ||||| || ||||| |||| |||||| | ||||| |||||| Sbjct 474862 ATCATGAACTCCTTTGTGAATGACATCTTCGAGTGCATCGCCGGTGAGGCGTCCCGCCTG 474803 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTG 725096 |||| || ||||| |||| || ||| | | ||||||||||| |||||| | ||| Sbjct 474802 GCGCACTACAACAGGCGCTCGACCATCACATTGTGAGAGATCCAGACGGCCGTGAGGCTG 474743 Query 725097 ATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 | ||| ||| || ||||||| |||||| || || ||||| Sbjct 474742 CTGCTGCCCGGGGAGCTGGCCAAGCACGCTGTGTCGGAGGG 474702 >seq1594 Length=153964 Score = 89.7 bits (98), Expect = 7e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 1818122 GGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGT 1818181 ||| |||||||||| ||||||| | | ||||||||| ||||||||| ||| || | Sbjct 126643 GGGAACGCCCACCTGGTCAATGCTCAGGTTGGGGTCGGGTGTGATGACGGTGCGGGCCGA 126584 Query 1818182 AAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCG 1818241 |||| ||||||||||||||| || || || | | ||||||||| ||||| | ||| Sbjct 126583 GAAGTCCACGCGCTTGCCCATGAGGTTCCCACGCACACGGCCCTCCTTCCCCTTCAGCCG 126524 Query 1818242 CT 1818243 || Sbjct 126523 CT 126522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176912558225354