Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 >seq5 Length=7401140 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 630452 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAG 630393 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||||||||| | |||| || |||||||||| |||||| ||||| | | Sbjct 630392 ATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 630333 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 630332 TCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACG 630273 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 630272 AAGATCTGCAT 630262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450741099450360