Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq41 104 3e-17 >seq41 Length=4869164 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| ||||||| ||| ||||||| | ||| ||||||| | ||||||| Sbjct 2061423 TGGGCCAGGAGGTGTTTGGGCTCCTGCCCGGGCTGATGATGTACGCGACCCTCTGGCTCC 2061482 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | ||||||||| | || || ||||||||||| || ||||||||| ||| |||||| | Sbjct 2061483 GCGAGCACAACCGCGTCTGTGACGTGCTGAAGCAGGAGCACCCGACGTGGGGCGACGAGC 2061542 Query 214212 AGCTGTTCCAGA 214223 |||| ||||||| Sbjct 2061543 AGCTCTTCCAGA 2061554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723256557922080