Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq489 134 2e-26 seq178 125 1e-23 seq718 84.2 3e-11 >seq489 Length=1618624 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 39631 ATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACC 39690 ||||| |||||||||| ||||| | || || || || || ||||||||||| | || Sbjct 408021 ATGTATTACCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAAGCC 408080 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750 | ||| || |||||||||||||||||||||||||| || |||||||| ||||| ||||| Sbjct 408081 TCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGC 408140 Query 39751 TGCAAATGCAACAAGTCTCTCTCC 39774 ||||| ||||| | |||||| || Sbjct 408141 AGCAAAGGCAACCACTCTCTCCCC 408164 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| || ||||||||||| || ||||||||||||| | |||| |||||||||| Sbjct 416311 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGGATATGTGAAATAAAATAT 416370 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGT 40091 ||||| || | | |||| || ||||||| Sbjct 416371 TTTTCTTCTGATTTCAACTTGTTCCAGT 416398 >seq178 Length=3009335 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | || |||||||| |||||||||||||||| || | || | Sbjct 616908 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 616849 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||||| |||| |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 616848 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 616789 Query 39759 CAAC 39762 | || Sbjct 616788 CTAC 616785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | || || ||||| | |||||| |||||||||||||| |||||||| || || Sbjct 613726 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 613667 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || |||||||| | ||||| || || || || ||| Sbjct 613666 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 613621 >seq718 Length=1082811 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||| || || || | |||| || ||||| || ||||||||||| || || | ||| Sbjct 686355 TGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATGGAT 686414 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 |||||||| |||| ||| ||||| || || ||||||||||| || Sbjct 686415 TCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 686458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686828800883880