Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq178 114 1e-20 seq448 109 4e-19 seq489 104 2e-17 seq47 86.0 5e-12 >seq178 Length=3009335 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | ||||||| || ||||||||||| || || |||||||| ||||| Sbjct 613619 CAAGAAGTGCAGATCACAGAAGCTCGCTGTTTTTATGGCTTCCAGATTGCCATGGAAAAC 613678 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||| |||||||||||||| || ||||| || ||||| |||||| Sbjct 613679 ATTCATTCAGAAATGTACAGTCTGCTTATAGACACTTACATAAAAGAT 613726 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| |||||||| || ||||| | |||||||| |||||||| |||||||| Sbjct 618180 AATCCATTTGACTTTATGGAGAACATTTCACTTGAAGGCAAGACAAACTTCTTTGAAAAG 618239 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || |||||||||||| | ||||| |||||| Sbjct 618240 AGAGTAGGAGAATATCAGAGGATGGGAGTCATG 618272 >seq448 Length=1749325 Score = 109 bits (120), Expect = 4e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTG 41105 |||||||| || || || || ||| | || || || || ||| |||||||| || Sbjct 713299 TTGATGGCTTTACCCCCCTGCCATGCTCTCTGCCAATTCTATGTTGTAAATGGTGAGCTT 713240 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || || || ||||||| ||||| || || ||||||||||| || || || ||||| || Sbjct 713239 TCTTGCCAGCTGTATCAGAGATCTGGAGATATGGGACTAGGAGTGCCTTTCAACATTGCC 713180 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 |||||| | ||||||||||| |||||||| || || || Sbjct 713179 AGTTATTCACTGCTCACGTACATGATTGCTCATGTGAC 713142 >seq489 Length=1618624 Score = 104 bits (114), Expect = 2e-17 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| || | || || ||||| | |||||||| || ||||| |||||||| ||||| Sbjct 408162 GGAGA--GAGTGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCT 408105 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||| | ||||| |||| ||||||||||| |||| || || |||||| | Sbjct 408104 GCCATATTTTGGCTGAAGAAGAGAGGCTTGATGCCTGGACTGACTTTCTCCAATGAGCTC 408045 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 408044 ATTAGCAGAGATGA 408031 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| || | |||||||| || ||||| ||||| ||||| ||| ||| || ||| Sbjct 415058 CAGGAAGTACAGATCCCAGAAGCTCGCTGTTTCTATGGTTTTCAGATTCTCATTGAGAAT 414999 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||| || || ||||||||||| || ||||| || |||||||||||| Sbjct 414998 GTTCACTCAGAGATGTACAGTCTGCTAATAGACACTTACATCAAAGAT 414951 >seq47 Length=4703275 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 47225 TTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGA 47284 |||| |||| | || | ||||| || ||| || ||||||| || || ||||||||||| Sbjct 2350492 TTTTCAGGATTGTACAAGAAATCGGGTAAACTAGTATTTCTTGGCTTGGACAATGCAGGG 2350551 Query 47285 AAAACGGCATTACTCCACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTACATTA 47344 ||||| ||||||| |||||||| ||| | | | || | ||||| ||||||| || Sbjct 2350552 AAAACCACATTACTGCACATGCTTAAAGATGACAGATTGGGACAGCATGTCCCTACACTA 2350611 Query 47345 CATCC 47349 ||||| Sbjct 2350612 CATCC 2350616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397410868498585