Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_027916.2 Length=160358 Score E Sequences producing significant alignments: (Bits) Value seq2037 96.9 4e-15 >seq2037 Length=35843 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 13230 CGTGCTGTC-TGCCAAGATGTCTGGATCGGGCACCTGGGGAAGTGTTACTATTTTTCAGA 13288 ||||||||| || | | || |||||||| | ||||||||| ||||||||||| || || Sbjct 16730 CGTGCTGTCCTGTCCTGCTGGCTGGATCGAGTACCTGGGGAGATGTTACTATTTCTCCGA 16789 Query 13289 GGCTGAAGGAAACT-GGACTCACGGGCAAAGCCAGTGTTTTGCCCTCGGTGCCTCCCTGG 13347 ||| | || | || |||||| | | || ||| | || | | | |||||||||||||||| Sbjct 16790 GGCCAAGGGGAGCTGGGACTC-CAGCCAGAGCAACTGCTCTTCTCTCGGTGCCTCCCTGG 16848 Query 13348 TGGGGATTGACAGCCAGCAGGAAATGG 13374 ||||||||| || ||||||||| Sbjct 16849 CCAGGATTGACAATGAGAAGGAAATGG 16875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512957852687760