Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq178 86.0 7e-12 seq718 84.2 3e-11 >seq178 Length=3009335 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 95168 AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAA 95227 |||||||||||||||| |||||||||||| || || || |||||||||||||| |||| Sbjct 618178 AGAATCCATTTGACTTTATGGAGAACATTTCACTTGAAGGCAAGACAAACTTCTTTGAAA 618237 Query 95228 AGAGGGTTGGGGACTAT 95244 |||| || || || ||| Sbjct 618238 AGAGAGTAGGAGAATAT 618254 >seq718 Length=1082811 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 105497 GGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTG 105556 ||| || | ||||| |||||| | ||||||||||||| || ||||| || || || ||| Sbjct 686485 GGTGTTAGGAACAGCCTCCTCCTTTCTCCAATGCCAACTGCTTCCACGGCTCAGATTTTG 686426 Query 105557 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCG 105616 || |||||||||| | | || ||||| || | |||||||| | || |||| | Sbjct 686425 GGCAATAATGAATCCATCGAGCCCTATACCAGTAACATCTACACACGCCGAGTCCTCTCA 686366 Query 105617 GGAGAGTTT 105625 ||||||||| Sbjct 686365 GGAGAGTTT 686357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583192871989080