Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq124 205 3e-47 seq5 138 3e-27 seq780 131 5e-25 seq41 109 2e-18 >seq124 Length=3518557 Score = 205 bits (226), Expect = 3e-47 Identities = 376/544 (69%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 349765 AAATATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 |||| || | || ||||| | |||||||| ||||| ||||| || | || ||| |||| Sbjct 2050098 AAATGTTTTGATCTTTGACCTGGGTGGTGGCACTTTCGATGTGTCTATTCTCACAATTGA 2050039 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 ||| || || |||||||| || | ||||| || ||||| || || ||||||||||| || Sbjct 2050038 AGATGGTATCTTTGAAGTGAAGTCCACTGCAGGCGATACCCACCTGGGTGGAGAAGACTT 2049979 Query 349885 TGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATA 349943 |||||| | | || || || || ||||| || || ||||| || | || | Sbjct 2049978 TGATAACAGAATGGTCAACCACTTCATTGCTGAATTCAAACG-CAAGCACAAGAAAGACA 2049920 Query 349944 TTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTT 350003 | | || || |||||| | || || || | || || ||||||||||| |||||| Sbjct 2049919 TCAGTGAAAACAAGAGAGCAGTTCGCCGTCTTCGCACAGCATGTGAACGTGCAAAGCGTA 2049860 Query 350004 CCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATT 350063 || | || || | || || || |||||| ||||||||||| ||| |||| || | Sbjct 2049859 CCCTCTCCTCCAGCACGCAGGCCAGTATTGAGATTGATTCTCTCTATGAGGGCATTGACT 2049800 Query 350064 TCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGC 350121 ||| | || || ||||| ||||| |||||||| || | ||| ||||| || | | Sbjct 2049799 TCTACACCTCAATCACACGAGCTCGCTTTGAAGAGTT--GAATGCTGATCTGTTCCGTGG 2049742 Query 350122 AACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGA 350181 || |||| || ||||| || | || ||||| || | |||| ||||| | Sbjct 2049741 TACGCTGGACCCCGTGGAGAAGGCCTTGCGGGATGCCAAGCTCGACAAATCCCAGATCCA 2049682 Query 350182 TGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGA 350241 || |||| || |||||||| || || || || ||||| |||| | | ||| || Sbjct 2049681 CGACATAGTATTGGTTGGTGGGTCCACTCGCATCCCAAAGATTCAGAAACTCCTACAAGA 2049622 Query 350242 GTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATG 350300 || || ||||||||||||| | ||| | || ||||| ||||||||||| || || | Sbjct 2049621 CTTCTTCAATGGCAAAGAACTGAACAAGAGC-ATCAATCCTGATGAAGCTGTAGCTTACG 2049563 Query 350301 GTGC 350304 |||| Sbjct 2049562 GTGC 2049559 Score = 154 bits (170), Expect = 4e-32 Identities = 356/531 (67%), Gaps = 4/531 (1%) Strand=Plus/Plus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAA-TTCTTTGCCATTA 183320 ||||||| || || ||||||||||| || || || | | | | | |||||||||||| Sbjct 2049557 CTGCACCGTAAGCTACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGTTCTTTGCCATTG 2049615 Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380 || || ||| || | || ||||| ||||| || | ||| || ||||| || |||||| Sbjct 2049616 AAGAAGTCTTGTAGGAGTTTCTGAATCTTTGGGATGCGAGTGGACCCACCAACCAATACT 2049675 Query 183381 ACTTCATCGATATTACTTTTA-CTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439 | || | ||| | ||| | | ||| | ||| || | || || || ||||| Sbjct 2049676 ATGTCGTGGATCTGGGATTTGTCGAGCTTG-GCATCCCGCAAGGCCTTCTCCACGGGGTC 2049734 Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499 || || | || | ||| | |||||||| || | |||| || | || | Sbjct 2049735 CAGCGTACCACGGAACAGATCAGCATTCAACTCTTCAAAGCGAGCTCGTGTGATTGAGGT 2049794 Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGA 183559 | |||||||| || | ||| | |||||||| ||||| | || || || || Sbjct 2049795 GTAGAAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGCGTGCTGGAGGA 2049854 Query 183560 TAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATC 183619 | || | || || |||||||||||||| | || || || | || ||| || || Sbjct 2049855 GAGGGTACGCTTTGCACGTTCACATGCTGTGCGAAGACGGCGAACTGCTCTCTTGTTTTC 2049914 Query 183620 TGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGT 183679 | || |||| || || || | ||| ||||||| ||| || || | | | ||| | Sbjct 2049915 ACTGATGTCTTTCTTGTGCTTGCGTTTGAATTCAGCAATGAAGTGGTTGACCATTCTGTT 2049974 Query 183680 ATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCC 183739 |||||| ||||| ||||| | || |||||||| ||||| | || |||||||| || || Sbjct 2049975 ATCAAAGTCTTCTCCACCCAGGTGGGTATCGCCTGCAGTGGACTTCACTTCAAAGATACC 2050034 Query 183740 GTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 |||||||| | | ||| || ||||| || || |||||||||| ||||| Sbjct 2050035 ATCTTCAATTGTGAGAATAGACACATCGAAAGTGCCACCACCCAGGTCAAA 2050085 Score = 105 bits (116), Expect = 2e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | |||||||||||||| || ||||| ||||||| || Sbjct 2050388 ACTGTTACTAATGCTGTGGTCACTGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCC 2050329 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | ||||| || | || || || |||| || |||||||| || Sbjct 2050328 ACAAAAGATGCTGGTACTATTGCAGGTCTCAACGTGCTCCGAATCATCAATGAACCAACA 2050269 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || ||||| ||||| | || |||| Sbjct 2050268 GCTGCTGCTATTGCTTATGGTTTAGACAAAA 2050238 >seq5 Length=7401140 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | || | || || || || || |||||||| || |||||||| || || Sbjct 630720 CATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTC 630661 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || ||||| ||||||||||| || | ||||| || || Sbjct 630660 GGACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGG 630601 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| |||||| | ||||| || || || || || || || || | ||| || || Sbjct 630600 GGGAATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTC 630541 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || ||||| |||||||| | || || || |||||||| Sbjct 630540 CACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630490 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | || | || || || || || |||||||| || |||||||| || || Sbjct 630948 CATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTC 630889 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || ||||| ||||||||||| || | ||||| || || Sbjct 630888 GGACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGG 630829 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| |||||| | ||||| || || || || || || || || | ||| || || Sbjct 630828 GGGAATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTC 630769 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || ||||| |||||||| | || || || |||||||| Sbjct 630768 CACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630718 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | || | || || || || || |||||||| || |||||||| || || Sbjct 631176 CATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTC 631117 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| || ||||| ||||||||||| || | ||||| || || Sbjct 631116 GGACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGG 631057 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| |||||| | ||||| || || || || || || || || | ||| || || Sbjct 631056 GGGAATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTC 630997 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || ||||| |||||||| | || || || |||||||| Sbjct 630996 CACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630946 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || |||||||| || |||||||| || || || | || || |||||| Sbjct 631385 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 631326 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||| ||||||||||| || | ||||| || || ||||| |||||| | ||| Sbjct 631325 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 631266 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || || | ||| || || || || ||||| || ||| Sbjct 631265 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 631206 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || |||||||| | || || || |||||||| Sbjct 631205 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 631174 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| | || | || || || || || || || ||||| || || || || || Sbjct 630492 CATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTC 630433 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || |||||||||||||| || | ||||| || || Sbjct 630432 AGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGG 630373 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || || || ||||| ||||| | ||| || || Sbjct 630372 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 630313 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| || || || || || |||||||| Sbjct 630312 CACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 630262 >seq780 Length=1004500 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || || || || || || || || || || | || || |||||| Sbjct 815395 AGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 815454 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| ||||| |||||||| ||| Sbjct 815455 TCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 815514 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || ||||| || || || ||||| | ||| || ||||| || || || | ||| Sbjct 815515 TGGATCTTAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 815574 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || || |||||||| Sbjct 815575 TTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 815606 >seq41 Length=4869164 Score = 109 bits (120), Expect = 2e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 ||||||||| |||| | |||||||| || ||| | || || || | || ||| | | Sbjct 3479781 ATTGATGAAATAGTCCTTGTTGGTGGCTCCACAAGAATCCCCAAGATACAGCAGCTGGTG 3479722 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||||||||| |||||| | |||||||||||||| ||||| || Sbjct 3479721 AAGGAGTTCTTCAATGGCAAAGAGCCTTCTCGTGGCATTAATCCAGATGAGGCTGTCGCC 3479662 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||||||||||||||| Sbjct 3479661 TATGGTGCTGCTGTTCAGGC 3479642 Score = 102 bits (112), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| |||||||| |||||||| || ||||| |||||||| ||||| |||||| | Sbjct 3479640 CAGCCTGAACAGCAGCACCATAGGCGACAGCCTCATCTGGATTAATGCCACGAGAAGGCT 3479699 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||||||||| || || || | || || || || || || ||||| || || |||| Sbjct 3479700 CTTTGCCATTGAAGAACTCCTTCACCAGCTGCTGTATCTTGGGGATTCTTGTGGAGCCAC 3479759 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | |||| |||||| |||| | ||| | | | || |||| || ||||| | Sbjct 3479760 CAACAAGGACTATTTCATCAATATCAGATTTCTTCAGATCAGAGTCTTCTAGCACTTTCT 3479819 Query 183430 CAACAGGGTCCATAGT 183445 ||||| | |||||| Sbjct 3479820 GGACAGGCTTCATAGT 3479835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515073517926551