Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq489 87.8 2e-12 seq718 86.0 7e-12 >seq489 Length=1618624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| |||||||||||||||||||| || || || ||| || || ||||| Sbjct 408149 GCCTTTGC-TGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCTGCCATATTTTGGCT 408091 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | ||| | ||||| || |||| ||||||||| ||||| ||| | | || || Sbjct 408090 GAAGAAGAGAGGCTTGATGCCTGGACTGACTTTCTCCAATGAGCTCATTAGCAGAGATGA 408031 Query 60110 GG 60111 || Sbjct 408030 GG 408029 >seq718 Length=1082811 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 ||||| ||||||| || ||||||||||||| | ||||| ||||||||||||| | Sbjct 692991 ATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGG 693050 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCA 79206 ||||| | |||||| || |||||| || || ||||||||| Sbjct 693051 TTACAAGAGTCCTTATACAGCATGTAAGGGGTACCGGTCTCA 693092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548460917430480