Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq212 104 3e-17 seq153 86.0 7e-12 >seq212 Length=2737041 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | ||| || ||||| ||||| || |||||||| Sbjct 749706 GTGAAGATGTATCGAGGGCTGGCAGAATCTTTCCCACCATGCAGCCTGGTACCAAACTGA 749647 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || ||||||||||| || |||||| || |||||||||||||| | | Sbjct 749646 CCAAGGGGCTGCAGCAGGTTGAGGTTATTACTGCCCACAAAGTTCTGAGCCAAATTAATA 749587 Query 152149 ATCGT 152153 || || Sbjct 749586 ATGGT 749582 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||| |||| ||| || |||||| || | ||||| || || Sbjct 749706 GTGAAGATGTATCGAGGGCTGGCAGAATCTTTCCCACCATGCAGCCTGGTACCAAACTGA 749647 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| |||| || ||||| ||||| || |||||||||||| |||||||| || | | Sbjct 749646 CCAAGGGGCTGCAGCAGGTTGAGGTTATTACTGCCCACAAAGTTCTGAGCCAAATTAATA 749587 Query 117425 ATCGT 117429 || || Sbjct 749586 ATGGT 749582 >seq153 Length=3182361 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||| | ||| |||||||||||||||||| ||| | ||||| || || Sbjct 2707016 GTGAAAATATAACGGGGGCTAGCAGCATCCTTGCCACCATGAAGCCTGGTACCAAACTGG 2707075 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | || || || | ||||| || |||||||| || |||||||| ||| Sbjct 2707076 CCAATGGGTTGCAGAAGATTAACATTGTTACTTCCAACAAAGTTCTGGGCCAAGTTAACA 2707135 Query 117425 ATCGT 117429 || || Sbjct 2707136 ATTGT 2707140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547152269856600