Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq780 179 4e-40 seq5 176 5e-39 seq718 91.5 2e-13 seq212 82.4 9e-11 >seq780 Length=1004500 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 815378 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815319 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||||||||| || |||||||| || || ||||| || |||||| Sbjct 815318 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815259 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 815258 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 815199 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || ||||||| | ||||| Sbjct 815198 ATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGTCTCAGGGGTGG 815152 Score = 178 bits (196), Expect = 1e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||||||| | || Sbjct 815606 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815547 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || |||||||||| || |||||||| || || ||||| || |||||| Sbjct 815546 GACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815487 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 815486 CAGAGGCTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 815427 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || ||||| || ||||||| Sbjct 815426 ATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGTCT 815389 Score = 172 bits (190), Expect = 6e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||||||| | || Sbjct 815834 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815775 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||||||||| || |||||||| || || ||||| || |||||| Sbjct 815774 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815715 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 815714 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 815655 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || || || || ||||||| Sbjct 815654 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCT 815617 >seq5 Length=7401140 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || ||||||||||| ||| | || Sbjct 630262 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 630321 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 630322 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 630381 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 630382 CAGAGGCTCATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 630441 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| || |||||||| || || || || |||| Sbjct 630442 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCG 630476 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||| | || ||||||||||| | || || ||||| ||| | || Sbjct 631174 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 631233 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||||| || || ||||| || |||||| Sbjct 631234 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 631293 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| || || || || |||| || ||||| | ||||| ||| Sbjct 631294 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 631353 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || || || |||| || | ||||| Sbjct 631354 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 631400 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||| | || ||||||||||| | || || ||||| ||| | || Sbjct 630490 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 630549 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||||| || || ||||| || |||||| Sbjct 630550 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 630609 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| || || || || |||| || ||||| | ||||| ||| Sbjct 630610 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 630669 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 | || ||||| || || || || || || |||| Sbjct 630670 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCG 630704 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||| | || ||||||||||| | || || ||||| ||| | || Sbjct 630718 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 630777 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||||| || || ||||| || |||||| Sbjct 630778 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 630837 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| || || || || |||| || ||||| | ||||| ||| Sbjct 630838 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 630897 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 | || ||||| || || || || || || |||| Sbjct 630898 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCG 630932 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||| | || ||||||||||| | || || ||||| ||| | || Sbjct 630946 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 631005 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||||| || || ||||| || |||||| Sbjct 631006 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 631065 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| || || || || |||| || ||||| | ||||| ||| Sbjct 631066 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 631125 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 | || ||||| || || || || || || |||| Sbjct 631126 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCG 631160 >seq718 Length=1082811 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| || ||||||||||||| || |||| || || |||||||| | |||||| Sbjct 692983 ACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGC 693042 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| ||| |||| |||||| || |||||| |||||||||||||| ||| |||| Sbjct 693043 TCTTCCGGTTACAAGAGTCCTTATACAGCATGTAAGGGGTACCGGTCTCAGTCTGGGACT 693102 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCG 81110 | |||||| | ||| | || | || || |||||| |||| Sbjct 693103 CAATGATGGCATACCAGAGCTGCTGGGCTTTCACCACCCTGCG 693145 >seq212 Length=2737041 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| | || | |||||||||||||| || |||||||| ||| | || |||| Sbjct 749582 ACCATTATTAATTTGGCTCAGAACTTTGTGGGCAGTAATAACCTCAACCTGCTGCAGCCC 749641 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| |||| ||||| || ||| |||| ||| | || |||||| Sbjct 749642 CTTGGTCAGTTTGGTACCAGGCTGCATGGTGGGAAAGATTCTGCCAGCCCTCGATACATC 749701 Query 32245 TTCAC 32249 ||||| Sbjct 749702 TTCAC 749706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570243980225040