Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq1279 114 2e-20 seq910 96.9 4e-15 seq235 84.2 3e-11 >seq1279 Length=365951 Score = 114 bits (126), Expect = 2e-20 Identities = 183/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 32841 GGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTATTACGGATTAACAGCA 32900 || || || |||||| | ||||| |||||| | ||||| | || || | |||| | || Sbjct 358034 GGGGCTCATATAAATGCATTTATTCATGTTGTTATGTACATGTACTATGAATTAGCTGCC 357975 Query 32901 ATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTAACTATCATACAATTG 32960 || ||| | | | || || ||||||||| ||| || || || |||||||| Sbjct 357974 TGTGGCCCTAAAGTTCAGCAGTACCTCTGGTGGAAACGATACTTGACCATACTACAATTG 357915 Query 32961 ATGCAGTTTCATTTAGCAATAGGTCATACAGCAATGTCTATATATATAGATTGTCCGTTC 33020 | ||||| ||| | | | | |||||| |||||| ||||| |||| ||| || Sbjct 357914 GTTCAGTTCCATGCGACTTTTAGCCGTACAGCCTGGTCTATTTATATTGATTATCCCTTT 357855 Query 33021 CCTAGATGGATACAGTGGGCTGTTATTATATATTCTATCACCTTTATCATCCTTTTTGGC 33080 || | |||||| || |||| ||| ||| | ||| || |||||||||| || | |||||| Sbjct 357854 CCCAAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTTATTCTCTTGTTTGGC 357795 Query 33081 AACTTTTATCTCAGGACATATAA 33103 ||||| || |||||||||| Sbjct 357794 AACTTCTACTATTGGACATATAA 357772 >seq910 Length=787505 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 || || |||| || | | |||| ||||| || ||||| | || || | || ||||| Sbjct 100831 GCTTTATGGTGGTACTATGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 100772 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 || | ||||||||||||||| | || || | || || || || |||| ||||||||| Sbjct 100771 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTTTATCATCATTGTACCATGTTC 100712 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || || | ||||| || || || ||| ||||||||||||| Sbjct 100711 ACCTTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACA 100671 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 32964 CAGTTTCATTTAGCAATAGGTCATACAGCAATGTCTATATATATAGATTGTCCGTTCCCT 33023 ||||| ||| | | | || |||||||| |||||| ||||| | |||||| || || Sbjct 96682 CAGTTCCATGTGACTCTTGGCCATACAGCCTGGTCTATTTATATTGGTTGTCCCTTTCCC 96623 Query 33024 AGATGGATACAGTGGGCTGTTATTATATATTCTATCACCTTTATCATCCTTTTTGGCAAC 33083 | |||||| || |||| ||| ||| | ||| || |||||||||| || | ||||||||| Sbjct 96622 AAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTTATTTTCTTGTTTGGCAAC 96563 Query 33084 TTTTA-TCTCAGGACATATAA 33103 || || | || |||||||||| Sbjct 96562 TTCTACTATC-GGACATATAA 96543 >seq235 Length=2631851 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 50971 ATTGGCTATAACTACCTGATGGTGATATTTACTTAACGCGTTCTTGGCTCTATCTATTAG 51030 ||| || || || |||||||| |||| || || || ||| | | |||| |||| Sbjct 398639 ATTTGCAATCACCACCTGATGCCGATACTTTTCCAAAGCCTTCAGTGATTTATCAATTAA 398580 Query 51031 TATTTCTTCATTTGTTTCTAGTTTAAAGGAAACAACAAATGCTTTTGGGGCCCATTCGTT 51090 || ||| || ||||| ||||||||||||| |||||| |||| ||||||||||| || Sbjct 398579 GATGTCTGGATCCGTTTCCAGTTTAAAGGAAATAACAAAAGCTTCAGGGGCCCATTCTTT 398520 Query 51091 AACTAAATGGGCCATCATTTTAGGAACGGCCTTCAT 51126 |||| | | || |||||| || || |||||| Sbjct 398519 GACTAGTGGAGACAGCATTTTTGGCACCATCTTCAT 398484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603110552056080