Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq116 315 9e-81 seq179 118 1e-21 >seq116 Length=3595629 Score = 315 bits (348), Expect = 9e-81 Identities = 690/1013 (68%), Gaps = 33/1013 (3%) Strand=Plus/Plus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| | |||||| ||||| ||||||| ||||||| | || | | | || || Sbjct 2217068 CGCCCGCCGACTACCTGAACCTGACGGCGGACTGCGCGAGCTACCGC---GCCCGGCGGC 2217124 Query 13660 ATCTCGTG-AGGC--CCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCG 13716 ||||| ||| | |||||| ||| |||| | || || |||||| ||| || | Sbjct 2217125 GCTTCGTGCAGGTGGCGCTGAGCGAGGAGGAGGCGGCCTTCCCGCTCGCCTTCTCCATGG 2217184 Query 13717 TGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGA 13776 | |||||| || || | ||| ||||||||||| | ||| ||||| | ||||| ||||||| Sbjct 2217185 TCATCCACGACCAGCTGGAGCTGTTCGAGCGCTTGCTGCGGGCCCTGTACGCGCCGCAGA 2217244 Query 13777 ACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGG 13836 |||| |||||||| ||||||||| ||||| | || || ||| | | || ||| | Sbjct 2217245 ACCTGTACTGCGTGCACGTGGACGCCAAGGCGCCCGCCGCCTTCCTGCAGGCCGTGCGCG 2217304 Query 13837 CCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACG 13896 || | ||| |||||||| ||||| | ||||| ||||||| | |||| || |||| Sbjct 2217305 CCCTGGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGGCTGGAGCACGTCGTCTACG 2217364 Query 13897 GCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG-GACGCCTCCCCC 13955 |||||| ||| ||||||||||||||| ||||||| ||||||| |||| ||| Sbjct 2217365 CGTCCTGGTCGCGCCTGCAGGCCGACCTCAACTGCATGGAGGACCTGCTGCGCC-GGCCC 2217423 Query 13956 GTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTG 14015 | ||| | |||||||||||| ||||| | |||||||| |||||||||||| Sbjct 2217424 GAGCCCTGGCGCTACCTGCTCAACACCTGCGGCACCGACTTCCCCCTCAAGACCAACGCC 2217483 Query 14016 GAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAG-GGCAT 14074 |||||||||||||| ||| || || ||||| ||| | ||||| ||| ||| Sbjct 2217484 GAGATCGTGCGGGCCCTGCAGCTGCTCCGCGGCCGCAACAACATGGAGTCGGAGCGGC-- 2217541 Query 14075 GCCCAACCA-CAAGCTGCACCGCATCAGGAAGAGGCAC---GTGGTGGCCAGCGGCGGCG 14130 | | ||| ||||| | ||| | | |||| ||| | || ||| | Sbjct 2217542 CCTCGGCCATCAAGCGCGAGCGCTGGCGCTACCAGCACCAAGTGTCTGAGAGTGGCACCC 2217601 Query 14131 TGGTGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCT---CAGGATCCCCATCTTTG 14187 ||||| |||||| || |||| ||| |||||||| ||| | ||| || Sbjct 2217602 TGGTG---CGCACCGGGGTGACCAAGAGCCCCCCGCCGCTGGGCAGTGCCAACATGTTCA 2217658 Query 14188 CGGGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAG- 14246 |||| ||||| ||| | | ||| || |||| |||||| | |||||| ||| ||| Sbjct 2217659 CGGGTAACGCCTACATAGTGGTGACACGGGGCTTCGTGCGCCACGTCCT---GGA-GAGC 2217714 Query 14247 CCGGTGGCCCTGCTCATGC---ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTG 14303 || | ||| | || | ||| |||| | ||||||| |||||||||||||||||| || Sbjct 2217715 CCCGAGGCGCAGCACCTGCTGGCCTGGGCCCAGGACACATACAGCCCCGACGAGCACGTG 2217774 Query 14304 TGGGCCACCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTAC 14363 |||||||| ||||| | || || ||| || | | || ||| ||||||| Sbjct 2217775 TGGGCCACGCTGCAGCGCCTGCCAGGCGTGCCGGGCGCCTTGCCACCCAACGACAAGTAC 2217834 Query 14364 GACACCTCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGAT 14423 || || |||||| || || | || ||||||||||||||| ||||| || Sbjct 2217835 GAGCTGTCTGACATGAACTCCCTGGCGCGCTTAGTCAAGTGGCACTACCTGGAGGGCGAC 2217894 Query 14424 ATCAAGAAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATC 14483 || || ||||| | |||||||| ||| ||||| ||| || ||||||||||||| Sbjct 2217895 ATACAGCGGGGGGCACCCTACCCGCCCTGCACCGGCACGCACCGCCGCGCCATCTGCATC 2217954 Query 14484 TTCGGGTCCGGCGACGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTT 14542 | ||| || ||| || ||| || ||| | ||||||| | ||||||||||| Sbjct 2217955 TACGGCCTGGGGGACCTGCCCTGGATGCTCCAGC-AGCAGCACCTGCTGGCCAACAAGTT 2218013 Query 14543 CGACGACGAG-ACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||| ||| ||||||| || |||| || ||||| ||| || ||||| Sbjct 2218014 TGAC-CTGAGTGTGGACGAGCAGGCGGTGCAGTGCCTGGAGGAGCACCTGCGC 2218065 >seq179 Length=3007277 Score = 118 bits (130), Expect = 1e-21 Identities = 203/291 (70%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 || ||||||||| || | |||||||| || || |||||||| |||||| | ||||||||| Sbjct 2323091 TTTGAGCGCCTCTTGCGCGCCATCTATGCGCCCCAGAACCTGTACTGCCTGCACGTGGAC 2323032 Query 13800 TCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATC---GCCAGGTGCTTCCCT 13856 |||| | | || ||| |||| ||| ||||| | ||| |||||||| Sbjct 2323031 CGCAAGGCGCCCACCGCCTTCCAGCGGGCCGT---GGCCAGCCTGGCCGCCTGCTTCCCC 2322975 Query 13857 AACGTGGCCCTGGCC-CACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCA 13915 || || ||||| | | | | | || |||||| |||| | | ||| |||| Sbjct 2322974 AATGTCTTTGTGGCCTCGCAGCCCGAGCG-CGTGGTCTACGCCGGCATCTCCCGCCTGCA 2322916 Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975 ||||||||| ||||| || |||||||| | |||| |||| ||| | ||| |||| Sbjct 2322915 GGCCGACCTGCGCTGCCTGCGGGACCTGGTGGGCTCCTCCGTGCCCTGGCGCTACTTGCT 2322856 Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 |||| |||||| |||||||||||| ||||||||||| | ||||| Sbjct 2322855 CAACGCCTGCGGGCAGGACTTCCCGCTGCGCACCAACCTGGAAGTGGTGCG 2322805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658662481585920