Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq780 116 3e-21
seq5 111 1e-19
>seq780
Length=1004500
Score = 116 bits (128), Expect = 3e-21
Identities = 166/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043
|| ||||||||| || || || ||||||||||||||| | || || || || || || ||
Sbjct 815610 CGGCATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCC 815551
Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103
||| | ||||||| || || || || || |||||||||||||| || || ||
Sbjct 815550 CAGTGACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGA 815491
Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163
|| ||| | | || | || ||||| || | ||||| | ||| | ||||| ||
Sbjct 815490 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTA 815431
Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| || ||||| || ||| | ||| |||| ||||| | |||| |||||
Sbjct 815430 CAACATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGTCTCAGGGGCGGCAT 815377
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043
|| ||||||||| ||||| || || ||||| |||||| | || || || || || || ||
Sbjct 815382 CGGCATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCC 815323
Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103
||| | ||||||| || || || || || |||||||||||||| || || ||
Sbjct 815322 CAGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGA 815263
Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163
|| ||| | | || | |||||||| || | ||||| | ||| | ||||| ||
Sbjct 815262 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTA 815203
Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||| || ||||| || ||| | ||| |||| ||||| | |||||||
Sbjct 815202 CAACATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGTCTCAGGGGTGG 815152
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || |||||||||||| | || || || || || || ||
Sbjct 815835 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 815776
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||||| || || || || || |||||||||||||| || || || ||
Sbjct 815775 TGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 815716
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | |||||||| || | ||||| | ||| | || || |||||
Sbjct 815715 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAA 815656
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || ||||| || ||| | || |||| ||||| | |||| |||||
Sbjct 815655 CATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTCAGGGGCGGCAT 815605
>seq5
Length=7401140
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || |||||||||||| | || |||||||| ||||| ||
Sbjct 630261 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAGCCCAG 630320
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||||| || || || || || ||||| || ||||| || ||||| ||
Sbjct 630321 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 630380
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | || || || || ||||||| | ||| | || || |||||
Sbjct 630381 GCAGAGGCTCATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 630440
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || || || || ||| | || |||| |||| ||| | ||||||||
Sbjct 630441 CATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCTTGAGAGGTGGCAT 630491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434867748315840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |