Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq780 167 5e-36 seq5 158 3e-33 >seq780 Length=1004500 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 815395 AGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 815454 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || | || |||||||| |||| ||||| |||||| Sbjct 815455 TCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 815514 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||||||| | ||||||||||| ||||| ||| Sbjct 815515 TGGATCTTAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 815574 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 815575 TTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 815606 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 815623 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 815682 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || | || |||||||| |||| ||||| |||||| Sbjct 815683 TCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 815742 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | ||||||||||| ||||| ||| Sbjct 815743 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 815802 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | |||||| || Sbjct 815803 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTT 815837 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 815167 AGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 815226 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || | || |||||||| |||| ||||| |||||| Sbjct 815227 TCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 815286 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | ||||||||||| ||||| ||| Sbjct 815287 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 815346 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 815347 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 815378 >seq5 Length=7401140 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 630473 AGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 630414 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || ||||| || |||| || ||||||||| Sbjct 630413 TCCAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 630354 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | || ||||| |||||||| ||| Sbjct 630353 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTC 630294 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | |||||| || Sbjct 630293 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTT 630259 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || || || || || | ||||| | |||||| Sbjct 630701 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 630642 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || || ||||| || | || ||||| || |||| ||||| ||||| Sbjct 630641 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 630582 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||||||| | || |||||||| |||| ||| Sbjct 630581 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 630522 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||| || || | |||||| Sbjct 630521 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630490 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || || || || || | ||||| | |||||| Sbjct 630929 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 630870 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || || ||||| || | || ||||| || |||| ||||| ||||| Sbjct 630869 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 630810 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||||||| | || |||||||| |||| ||| Sbjct 630809 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 630750 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||| || || | |||||| Sbjct 630749 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630718 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || || || || || | ||||| | |||||| Sbjct 631157 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 631098 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || || ||||| || | || ||||| || |||| ||||| ||||| Sbjct 631097 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 631038 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||||||| | || |||||||| |||| ||| Sbjct 631037 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 630978 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||| || || | |||||| Sbjct 630977 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630946 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || || || || || | ||||| | |||||| Sbjct 631385 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 631326 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || || ||||| || | || ||||| || |||| ||||| ||||| Sbjct 631325 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 631266 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||||||| | || |||||||| |||| ||| Sbjct 631265 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 631206 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||| || || | |||||| Sbjct 631205 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 631174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159013627316705