Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5 147 5e-30 seq780 136 9e-27 seq2665 95.1 3e-14 >seq5 Length=7401140 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||||||||| |||| ||||| || | || || | ||||| Sbjct 630474 CAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 630415 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || |||||||| ||||| || |||||||| Sbjct 630414 TTCCAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 630355 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || ||||| || | ||||| || Sbjct 630354 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGT 630295 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | ||||| || Sbjct 630294 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTT 630259 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || || || || || || | |||||| |||| || || | ||||| Sbjct 630702 CAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATC 630643 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||||||||| |||||||| ||||| || | || |||||||| ||||| ||||| |||| Sbjct 630642 TTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTC 630583 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | |||| || Sbjct 630582 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGT 630523 Query 225681 CTTGCCCGT 225689 |||||| || Sbjct 630522 CTTGCCGGT 630514 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || || || || || || | |||||| |||| || || | ||||| Sbjct 630930 CAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATC 630871 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||||||||| |||||||| ||||| || | || |||||||| ||||| ||||| |||| Sbjct 630870 TTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTC 630811 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | |||| || Sbjct 630810 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGT 630751 Query 225681 CTTGCCCGT 225689 |||||| || Sbjct 630750 CTTGCCGGT 630742 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || || || || || || | |||||| |||| || || | ||||| Sbjct 631158 CAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATC 631099 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||||||||| |||||||| ||||| || | || |||||||| ||||| ||||| |||| Sbjct 631098 TTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTC 631039 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | |||| || Sbjct 631038 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGT 630979 Query 225681 CTTGCCCGT 225689 |||||| || Sbjct 630978 CTTGCCGGT 630970 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || || || || || || | |||||| |||| || || | ||||| Sbjct 631386 CAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATC 631327 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||||||||| |||||||| ||||| || | || |||||||| ||||| ||||| |||| Sbjct 631326 TTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTC 631267 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| || ||||| || | |||| || Sbjct 631266 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGT 631207 Query 225681 CTTGCCCGT 225689 |||||| || Sbjct 631206 CTTGCCGGT 631198 >seq780 Length=1004500 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || |||||||| || |||| ||||| |||| || || | ||||| Sbjct 815394 CAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 815453 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 |||||||||||| ||||| ||||| || | || ||||| || ||||| ||||| ||||| Sbjct 815454 TTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 815513 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || |||||||| || || || || | ||||| || Sbjct 815514 CTGGATCTTAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 815573 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| ||| || | ||| | ||||| Sbjct 815574 CTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 815606 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || |||||||| || |||| ||||| || | || || | ||||| Sbjct 815622 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 815681 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 |||||||||||| || || ||||| || | || ||||| || ||||| ||||| ||||| Sbjct 815682 TTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 815741 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 815742 CTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 815801 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | ||||| || Sbjct 815802 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTT 815837 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || |||||||| || |||| ||||| |||| || || | ||||| Sbjct 815166 CAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 815225 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 |||||||||||| || || ||||| || | || ||||| || ||||| ||||| ||||| Sbjct 815226 TTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 815285 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 815286 CTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 815345 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 815346 CTTGCCAGTCA 815356 >seq2665 Length=5473 Score = 95.1 bits (104), Expect = 3e-14 Identities = 110/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 7719 TTCCTT--ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACT 7776 |||||| || || ||||| |||||| || || ||||| ||| |||||| |||||| | Sbjct 1131 TTCCTTCCATGTCAAGGGTAGGTAAGGTTTTTCGCGTTGCATCGAATTAATCCACATCAT 1072 Query 7777 CCACCGCTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACT 7836 ||||||||| | | |||||| || ||||||||||||| |||||| |||| | | Sbjct 1071 CCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCC 1012 Query 7837 CAGGTGG-AATATTTACGCGTTAGCT 7861 |||| || | || ||||||||||| Sbjct 1011 CAGGCGGTCAACTTCACGCGTTAGCT 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192388842705998