Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq448 104 2e-17 seq774 87.8 1e-12 >seq448 Length=1749325 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || || || ||||| |||||||||||||| || || || ||||| ||||| || || Sbjct 713135 TAGGCCTGTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGG 713194 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || ||||| || || || ||||| || |||||||| || ||||| || | Sbjct 713195 CACTCCTAGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTAC 713254 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || || || || || | |||||||| || || | ||||| Sbjct 713255 AACATAGAATTGGCAGAGAGCATGGCAGGGGGGTAAAGCCAT 713296 >seq774 Length=1013150 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 114286 AAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGAT 114345 ||| || |||||||| |||| ||| | || ||| | | ||| | ||||||||| || || Sbjct 573751 AAGTTCTCTGCTGAGCACTATGTTAATTCTATCTTTTAAAGGACGATTCTTTTCAGGAAT 573692 Query 114346 GGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||||| ||||| |||||||||||| ||| || || |||||| Sbjct 573691 AGAGAACCAGGTCTTCTTACCCATTATCAACACATTTTGTTTACCT 573646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406117079787862