Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq448 98.7 7e-16
>seq448
Length=1749325
Score = 98.7 bits (108), Expect = 7e-16
Identities = 119/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266
||| || || || ||||| |||||||||||||| || || || ||||| ||||| || ||
Sbjct 713135 TAGGCCTGTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGG 713194
Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326
|| || || ||||| || || || ||||| || ||||| || || ||||| ||||
Sbjct 713195 CACTCCTAGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTAC 713254
Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368
|| || || || || | || ||||| || || | ||||||
Sbjct 713255 AACATAGAATTGGCAGAGAGCATGGCAGGGGGGTAAAGCCAT 713296
Score = 93.3 bits (102), Expect = 3e-14
Identities = 122/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547
|||| || | || || ||||| ||||| ||||||||||| || || || ||||| | |
Sbjct 715755 TCATATCTTTATATTCCGCTCCAAAATGTCTCCATTGGAAACCATAAACAGGTCCTAAAT 715814
Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607
| || || ||||| ||| || || ||||| || || | || || ||||| |
Sbjct 715815 CCCCTTCCATTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCGCGTGATCCATTGGCAT 715874
Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
|||| ||||| || ||||| |||||||||||||| | ||||| || ||
Sbjct 715875 CCCAAATCTTGACTCCCTTTTCGGAGAGCTCTTTAGCATTTGTAGAGCC 715923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369465242111027
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |