Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq178 95.1 2e-14 seq489 93.3 6e-14 seq718 89.7 7e-13 >seq178 Length=3009335 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | || |||||||| ||||| |||||||||| ||| | || || Sbjct 616906 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 616847 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | |||||| || | || ||||| ||||||||||| || ||||| || || || || || Sbjct 616846 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 616787 Query 46774 AC 46775 || Sbjct 616786 AC 616785 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | || || ||||| | ||||| ||||||||||||||||||||||| || || Sbjct 613726 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 613667 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || |||||||| | ||||| || ||||| || ||| Sbjct 613666 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 613621 >seq489 Length=1618624 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | || || || || || || |||||||| | || | ||| || Sbjct 408031 TCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAAGCCTCTCTTCTTC 408090 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||||||||| || || |||||||| || ||||| || ||||| || || || || || Sbjct 408091 AGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGGCA 408150 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 408151 ACCACTCTCTCCCC 408164 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || ||||| ||||||||||| || || | ||| | ||||||||| ||||||||||| | Sbjct 422488 ACCTCTTCTGCTGTCCAGAAGGATGCTTGTGCCTGTTTATACATTTTCCATATATCGGGG 422547 Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTC 47240 || ||||| || || || ||||||| | ||||||||| ||| | ||| || Sbjct 422548 TACTGGATAGGGAAGATGACAAATCGACGAGGATTTTTTCGAAGAAGAGGCTC 422600 >seq718 Length=1082811 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||| ||||| || | |||| || ||||| || ||||||||||| || || | ||| Sbjct 686355 TGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATGGAT 686414 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||||| || |||||||| ||||| || |||||||| ||||| || Sbjct 686415 TCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 686458 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 76327 TATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTT 76386 ||| |||||||| || || || |||||||| || || || || || ||||||||||| Sbjct 692990 TATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCG 693049 Query 76387 GTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 |||||| ||||||||||| || | | || || || || ||| |||| || || || || Sbjct 693050 GTTACAAGAGTCCTTATACAGCATGTAAGGGGTACCGGTCTCAGTCTGGGACTCAATGAT 693109 Query 76447 AGATTTCCAGA 76457 | | ||||| Sbjct 693110 GGCATACCAGA 693120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712851369877440