Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5 116 9e-21 seq780 114 3e-20 >seq5 Length=7401140 Score = 116 bits (128), Expect = 9e-21 Identities = 163/224 (73%), Gaps = 11/224 (5%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || || ||||| ||||||||||| || | | || | |||||| Sbjct 630473 AGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 630414 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| |||||||||||||| | | || || ||||| | Sbjct 630413 TCCAGCTGCTTT--CCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGT 630356 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 | || || || || ||| |||| | | |||| ||| ||| || |||||||| | Sbjct 630355 CCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGAGTGA 630299 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACC 152110 | || ||||| || || ||||||||||||| |||||| |||||| Sbjct 630298 TGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTTTACC 630255 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || |||||||| || || || ||||| |||| | || | |||||| Sbjct 630701 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 630642 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| |||||| || ||||| |||||||||||||| | | || ||||| | || Sbjct 630641 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 630582 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || || || | || Sbjct 630581 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 630522 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | ||||||||||| |||||| Sbjct 630521 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630490 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || |||||||| || || || ||||| |||| | || | |||||| Sbjct 630929 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 630870 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| |||||| || ||||| |||||||||||||| | | || ||||| | || Sbjct 630869 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 630810 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || || || | || Sbjct 630809 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 630750 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | ||||||||||| |||||| Sbjct 630749 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630718 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || |||||||| || || || ||||| |||| | || | |||||| Sbjct 631157 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 631098 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| |||||| || ||||| |||||||||||||| | | || ||||| | || Sbjct 631097 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 631038 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || || || | || Sbjct 631037 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 630978 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | ||||||||||| |||||| Sbjct 630977 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630946 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || |||||||| || || || ||||| |||| | || | |||||| Sbjct 631385 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 631326 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| |||||| || ||||| |||||||||||||| | | || ||||| | || Sbjct 631325 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 631266 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || || || | || Sbjct 631265 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 631206 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | ||||||||||| |||||| Sbjct 631205 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 631174 >seq780 Length=1004500 Score = 114 bits (126), Expect = 3e-20 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || ||||| || || || || || ||||||||||| |||| | || Sbjct 815157 CCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 815216 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||||| || ||||| ||||| |||||||||||||| | | || || Sbjct 815217 GCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 815276 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || || || || || ||| |||| | | |||| ||| ||| || || Sbjct 815277 TTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTC 815333 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || |||||||| |||| |||||| Sbjct 815334 GAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 815378 Score = 114 bits (126), Expect = 3e-20 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || ||||| || || || || || ||||||||||| |||| | || Sbjct 815385 CCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 815444 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||||| || || || ||||| |||||||||||||| | | || || Sbjct 815445 GCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 815504 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || || || || || || |||| | | |||| ||| ||| || || Sbjct 815505 TTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTC 815561 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || |||||||||||||||| |||||| Sbjct 815562 GAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 815606 Score = 111 bits (122), Expect = 4e-19 Identities = 162/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || || || || ||||||||||| || | | || Sbjct 815613 CCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 815672 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||||| || ||||| ||||| |||||||||||||| | | || || Sbjct 815673 GCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 815732 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || || || || || ||| |||| | | |||| ||| ||| || || Sbjct 815733 TTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTC 815789 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || || ||||||||||||| |||||| || Sbjct 815790 GAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTT 815837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153683063723707