Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq178 98.7 1e-15 >seq178 Length=3009335 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||||| || | ||||||||||| || | ||| ||||||||||||| ||| || Sbjct 616906 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 616847 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | |||||| || | ||||| || || |||||||| || || || || || ||||| || Sbjct 616846 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 616787 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 616786 ACTACACGT 616778 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| |||| || || || || || | ||| |||||||| |||||||| ||||| || || Sbjct 613726 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 613667 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTC 23861 |||||| || ||||||||||| | |||||| Sbjct 613666 AATCTGGAAGCCATAAAAACAGCGAGCTTC 613637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521427266203800