Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq780 127 1e-24 seq5 125 5e-24 >seq780 Length=1004500 Score = 127 bits (140), Expect = 1e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || ||||||||| || ||| ||||| ||||||||||| || Sbjct 815604 CATGCCGCCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 815663 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || || |||||||| ||||||||||||| | |||||| || | Sbjct 815664 AGACAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGG 815723 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || ||| ||||| ||||| | | |||||||| || || Sbjct 815724 GGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTC 815783 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| | || || ||||| || || ||||||||||||||||| |||||| || Sbjct 815784 AACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTTG 815838 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||| || || ||| ||||| ||||||||||| || Sbjct 815376 CATGCCGCCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 815435 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| || |||||||||| | |||||| || | Sbjct 815436 GGACAGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 815495 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| || ||| ||||| |||| | |||| | |||||||| || | Sbjct 815496 GGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTC-ACGTTCTCAATGGTGTCACTGGGCT 815554 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || || || |||||||||||||| |||||| Sbjct 815555 CAACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 815607 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || |||||| || || ||| ||||| ||||||||||| |||| Sbjct 815152 CCACCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 815211 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| ||||||||||||| | |||||| || | || Sbjct 815212 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 815271 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||||| || ||| ||||| ||||| | | |||||||| || || ||| Sbjct 815272 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 815331 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 815332 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 815379 >seq5 Length=7401140 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | || ||||||||| || ||| || || ||||||||||| || Sbjct 630492 CATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTC 630433 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | |||||| || | Sbjct 630432 AGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGG 630373 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | |||||||| || || Sbjct 630372 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 630313 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| | || || ||||| || || ||||||||||||||||| |||||| Sbjct 630312 CACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 630261 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | || ||||||||| || || |||||| || || ||||| || Sbjct 630720 CATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTC 630661 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || ||||| ||||| |||||||| | | |||||| || | Sbjct 630660 GGACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGG 630601 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| | ||| ||||| ||||| |||| | |||||||| || | Sbjct 630600 GGGAATGCCTTCTGTGTCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCACGGGGCT 630542 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || | ||||| || || |||| |||||||||||| |||||| Sbjct 630541 CCACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATG 630489 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | || ||||||||| || || |||||| || || ||||| || Sbjct 630948 CATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTC 630889 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || ||||| ||||| |||||||| | | |||||| || | Sbjct 630888 GGACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGG 630829 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| | ||| ||||| ||||| |||| | |||||||| || | Sbjct 630828 GGGAATGCCTTCTGTGTCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCACGGGGCT 630770 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || | ||||| || || |||| |||||||||||| |||||| Sbjct 630769 CCACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATG 630717 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | || ||||||||| || || |||||| || || ||||| || Sbjct 631176 CATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTC 631117 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || ||||| ||||| |||||||| | | |||||| || | Sbjct 631116 GGACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGG 631057 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| | ||| ||||| ||||| |||| | |||||||| || | Sbjct 631056 GGGAATGCCTTCTGTGTCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCACGGGGCT 630998 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || | ||||| || || |||| |||||||||||| |||||| Sbjct 630997 CCACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATG 630945 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||||||||| || || |||||| || || ||||| |||| Sbjct 631400 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGAC 631341 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || ||||| ||||| |||||||| | | |||||| || | || Sbjct 631340 AGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 631281 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | ||||| | ||| ||||| ||||| |||| | |||||||| || ||||| Sbjct 631280 ATGCCTTCTGTGTCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCACGGGGCTCCAC 631222 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| | || | ||||| || || |||| |||||||||||| |||||| Sbjct 631221 CTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATG 631173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359949522752589