Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq41 150 3e-31 seq259 145 1e-29 >seq41 Length=4869164 Score = 150 bits (166), Expect = 3e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 ||||||||||||||||||||||||||| | |||||||||||| |||| ||| || || Sbjct 2063224 CCGCCGAAGGTGCTGGGCTTCCAGTACACGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 2063165 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||||||||| || ||||| | ||| | |||||||| || ||||||||||||| | Sbjct 2063164 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCGTTGGCTTGC 2063105 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 ||||| |||| || | || | ||| | ||||| || |||| ||| ||||| || || Sbjct 2063104 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCGTCGATGTCGCCGTACAGCTCC 2063045 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | || || |||||| ||||||| Sbjct 2063044 GCCAGCTGCGCCGCCTTCTCCTCCTCTCCTG 2063014 Score = 105 bits (116), Expect = 1e-17 Identities = 178/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| || |||||||| | ||| || || Sbjct 2061579 TCACCGATGAGGATGAGCCGGGCCGTCTGGAAGAGCTGCTCGTCGCCCCACGTCGGGTGC 2061520 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || ||||| || || || || | |||||| || | |||||||| || ||||||||| Sbjct 2061519 TCCTGCTTCAGCACGTCACAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTCGCGTACATC 2061460 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || ||||| || | || ||||| |||| || || || ||||| || || |||| Sbjct 2061459 ATCAGCCCGGGCAGGAGCCCAAACACCTCCTGGCCCACGGCCAGCTGC-TGGGCCTGGGC 2061401 Query 9412 ACT-TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTC 9470 | || || ||||||||||||||| | | | |||| ||| || |||| || Sbjct 2061400 GGTGCCGTTGGGGTAGATCATGTGCACCGGCGCCTGGAGCACCGTGGGCGGGTACACCTC 2061341 Query 9471 ACCGTCAATCATCTG 9485 ||||| | || ||| Sbjct 2061340 CCCGTCCACCACCTG 2061326 >seq259 Length=2521796 Score = 145 bits (160), Expect = 1e-29 Identities = 203/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| |||||| | |||| || || | | || | ||||| || Sbjct 1698335 AAGGGACAACCCTTTACGTTGTTGCAGATGAGTTTTTGCAGGGAGGCCGTGTTGACTATT 1698276 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 | || || || ||| || || ||||| |||||||||||| | || |||||||| | Sbjct 1698275 TCAAAGCCTACTCTTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAGCAGATAGCA 1698216 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| |||||||| | ||||| || || || | ||| | || ||||||| ||| Sbjct 1698215 TTTCCCATCAGGCCTTTCAACGAGAATGGTGCTCCAAGCTCTACCATAGTCTCACCAAAG 1698156 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||| |||||||||||||| || || | || | |||||||||| ||| || | | Sbjct 1698155 ATGGCTCCTGGACGGGGCTTTTCTACTAACAGACCAGGATACAGCTCCATAGCATCAATG 1698096 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 ||||| ||||| | |||||||| || || || ||||||||| Sbjct 1698095 TCTCCATAAAGCTCTTCCAGTTCGGCTGCCATTTCTTTTTCTCCT 1698051 Score = 111 bits (122), Expect = 2e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || || ||||| | | || ||| |||||||||||| || || || || Sbjct 1695907 ATGAGTCTGGTAGTTTGGAATAACCGTTCATCATCCCATTCTGGATGCTCCTGCTTAAGG 1695848 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||| ||||||||||| || || || |||||||| | || || Sbjct 1695847 ATGTCACAGACCCGGTTGTGCTCCCTGAGCCATATGGTAGCATACATCATTAAACCTGGG 1695788 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||||||||| |||| || || |||| | | | | || || || | |||||| Sbjct 1695787 ACCAGGCCAAACACCTCCTGTCCTACAGAGAATTGTAGATGCTCAGGAACATGAGGAGGA 1695728 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || ||||| | | || || || || | || || |||||||| || |||||||| Sbjct 1695727 TACATCATTTCTGCTTGAGTATCCTTCACTGTTGGAGGGTACATTTCTCCACCAATCATC 1695668 Query 9484 T 9484 | Sbjct 1695667 T 1695667 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| || || ||||| |||||||| || ||| ||||||| |||| Sbjct 1694795 CTTACCCCATGCCCAAGGCCTTTTGTGAAGGCTGGTCCTTTGTGGTGATCAGTCTTAAAG 1694736 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 |||||||| ||||| ||||| |||| || | ||||| | || |||| ||| ||||| Sbjct 1694735 AACTGGTGGGTGAAGTGTTGAGCAAAGAATGTGAACATAATATTTGTGCTCTGTGGATCT 1694676 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 ||| | || | ||| || ||| || |||||||| Sbjct 1694675 GGAATAAATTTTTTCCTCAGCAGAAACTTCTCCACAAC 1694638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716793310735680