Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq254 89.7 5e-13 seq1 82.4 8e-11 >seq254 Length=783762 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 ||||| || |||||||||||| ||||| | ||||| || || | |||||| | | Sbjct 222338 CCCACATAACCGTTGGGATCCCGGCCATCCAGTTCGTAGCGGTCATTGAGGTAGATGCTG 222279 Query 119921 ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATA 119980 | | || || ||| |||| | | |||||||||| ||||| || ||||| ||||| Sbjct 222278 AATTTCAAGGCCTCTTCGGGAGAATTGGTCCATTCCAGGATTTTCTTGGCCCAATACATC 222219 Query 119981 CGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTG 120024 || | | | |||||||| || ||||| ||||||| || || || Sbjct 222218 CGCAGGAAGCCATGCATCTTCCCTTCGTGAACCATCTGGAGCTG 222175 >seq1 Length=263920458 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||| ||||| ||||| || || || || | || |||||| ||||| || | Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | ||||||||||| | || || || || |||||||| || || || || | ||||| | Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 17106 CGATTAATCGTTC 17118 | | || |||||| Sbjct 148006131 CTACTACTCGTTC 148006143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517503827600760