Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq46 98.7 7e-16 seq4 89.7 4e-13 >seq2 Length=199619895 Score = 104 bits (114), Expect = 2e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| | |||| ||||||| | || ||| |||||| |||||||||| || || || ||||| Sbjct 17200708 CTTCATTTCCCTGCTGAGTATAATATTGATTCTGTCTTTTAAAGGGCGATTTTTTTCAGG 17200767 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 ||| |||||||||||| | || ||||| || |||| ||||||||| Sbjct 17200768 AATGGAGAACCAAGTCCTCTTCCCCATTATTACTACATTCTGTTT 17200812 >seq46 Length=2387735 Score = 98.7 bits (108), Expect = 7e-16 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 3976 TTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGA 4035 ||||| ||||| ||||||||| |||| | ||| | || || || || | || || | Sbjct 1126931 TTCTTTTCATAAACTTCAAATCTGTAGTGAATGCCATTATCCTCCTGAATATCAGTGGGG 1126872 Query 4036 ACACTTGGATATTCTATCAAA-AGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGT 4094 || | || ||| ||| | || || ||||| |||| ||||| |||||||||||| || Sbjct 1126871 ACCCCTGCATAG-CTAGGTAGCAGCTTATATTTTTCTAAATCAATTTCTGGAAAAAATGT 1126813 Query 4095 GTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT-GGATAAC 4153 |||| ||||||||| || | ||| || |||||||| ||| ||| | || || | Sbjct 1126812 ATCACTTTCAAAGTCATGTAAGATTCTTGTCACAAAGAGTCATTGAT-GAATCGGCTTGT 1126754 Query 4154 TCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCA 4193 ||| ||| | ||||| | ||||| ||||| | |||||| Sbjct 1126753 CCATTGCTGCCTTATAAATTGAACTGCCTCCGACTATCCA 1126714 >seq4 Length=156502444 Score = 89.7 bits (98), Expect = 4e-13 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 || |||||||||||||| |||||| || || ||||| |||||||| || || |||||| Sbjct 39524765 GTAACATGAGCAATCATTGAAGTTAGCAGTGAGTAGCTGGCAATGTTGAAGGGTACTCCT 39524706 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATA 101871 || |||||||| | || | ||||||| || || || || | ||| | ||| ||||| Sbjct 39524705 AATCCCATATCTCCAGAACGCTGATACAACTGGCAAGAGAGTTCACCATTTACA-ACATA 39524647 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAA 101924 || || | | |||| ||||| || || ||||| || || ||| ||| Sbjct 39524646 GAACTGGCAGAGAGCATGGCAAGGGGGTAATGCCATTGCAGAGATATCTAAAA 39524594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361222771449707