Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 129 7e-25 seq514 84.2 3e-11 >seq1 Length=263920458 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | ||| ||||| || |||||||| ||||| || || ||||||| Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||||||||| || ||||| || || |||||||| |||||||||||||| ||||||| Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 24277 C 24277 | Sbjct 148006131 C 148006131 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTTT 23845 ||| || || |||| || | ||| ||||||| | || ||||| |||||||| | Sbjct 148002199 TTAGAAATCTGCATCCAAGGTGAAAGAATTGTCTACAGCTTTTGACATCACTCCCATCCT 148002258 Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 || ||||| || ||||| ||||| || ||||||||||| ||||| | ||| ||||| || Sbjct 148002259 CTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTGCCTTCCAGTGAGATATTCTC 148002318 Query 23906 CATGAAATCGGATGGATT 23923 |||||| || | ||||| Sbjct 148002319 CATGAAGTCAAACGGATT 148002336 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/118 (76%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 24629 ATCC-ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT 24687 |||| || ||||| ||||||||||||| || ||||| || || ||||| | ||| |||| Sbjct 148013513 ATCCTACCTCTTCTGCTGTCCAAAATGAAGCTTCTGCTTTCTTGTACATTTGCCAAATGT 148013572 Query 24688 CATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 24745 |||| || ||||| ||||| || ||||| | | |||||| | ||| | |||||| Sbjct 148013573 CATGGTACTGAATGGGAAAGATCACAAAGCGGTGTGGATTATCCCGAAGAAGTGGTTC 148013630 >seq514 Length=269024 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || || || ||||| || || || ||||| || || ||||| || | Sbjct 165380 CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTGGCGGCAAGGA 165321 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | || || ||||| || | || || | ||||||||||| Sbjct 165320 TGGCATAGTCGGGGTGCTTAGTGGTCAGGGTGGCGGCAGTCTCAGCAGCCAGAGTGTCCA 165261 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | || | || ||||| || ||||| Sbjct 165260 GTTCCACAGTGGTGACACCACTGTAGAGGCCCTGGATCACTTTCAT 165215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593673679245360