Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3801 154 2e-32 seq8 123 3e-23 seq14 109 6e-19 seq6 93.3 4e-14 >seq3801 Length=8881 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| |||| ||||| ||| | Sbjct 3901 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTCGAGCCCAGC 3842 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| ||||| | ||||| || ||||||||| | ||||| Sbjct 3841 GACACCATTGAGAACG-TGAAGGCGAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCA 3783 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || || || ||||| || || | ||||| || ||||||||| Sbjct 3782 GCAGAGGCTCATCTTTGCCGGGAAGCAGCTCGAAGATGGCCGCACTCTTTCCGACTACAA 3723 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || ||| ||||| | |||||||| Sbjct 3722 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTCCGGGGCGGC 3674 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || ||||| ||||||||| | || || ||| | | | Sbjct 5497 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTGGAGGTTGAACCAAGC 5438 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||||| || || | |||||||| ||||||||| | ||||| Sbjct 5437 GACACTATTGAAAACG-TCAAGGCCAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCA 5379 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| ||||||||||| || || | ||||| ||| || ||||| Sbjct 5378 GCAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTCTCAGATTACAA 5319 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| || ||||| ||| |||| | ||||| ||| Sbjct 5318 CATCCAGAAAGAGTCCACTCTCCATCTTGTGCTGCGGCTCAGGGGAGGC 5270 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || | || ||||| |||||||| | || || || | Sbjct 5728 AAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTGGAGCCA 5669 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | |||||||||||||||||| | ||| Sbjct 5668 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGAC 5609 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | | |||| ||| ||||||||||| || || | ||||| || ||||||| Sbjct 5608 CAGCAGAGGTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACTCTTTCCGACTAC 5549 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| ||| |||| || || || ||| |||| |||||||| || Sbjct 5548 AACATCCAGAAAGAGTCCACTCTTCACCTTGTGCTGCGTTTGAGGGGAGG 5499 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| |||| || ||| | | Sbjct 4357 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTGGAACCAAGT 4298 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||||| | ||||||||||||||||| | || ||| Sbjct 4297 GACACCATTGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGCATCCCTCCAGATCAG 4238 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | || | ||| || || ||||| || || | ||||| || || || ||| Sbjct 4237 CAAAGGTTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTGTCAGATTATAAC 4178 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || || || || |||| |||||||| ||| Sbjct 4177 ATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGTTTGAGGGGAGGC 4130 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || || ||||||||||| |||| || ||| | | | Sbjct 4585 ATGCAAATCTTTGTGAAGACCCTGACTGGAAAAACCATCACTCTCGAAGTGGAACCAAGC 4526 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || | |||||| | ||||||||||||||||| | ||||| Sbjct 4525 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGCATCCCGCCAGACCAA 4466 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || ||||||||||| || || | || || || |||||||||| Sbjct 4465 CAGAGATTGATTTTTGCCGGCAAACAGCTTGAAGATGGCCGTACTCTGTCCGACTACAAC 4406 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| || || ||||| | || | |||| ||| Sbjct 4405 ATCCAGAAAGAATCCACTCTCCACTTAGTGCTACGTCTCCGGGGAGGC 4358 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || ||||||||||| |||| ||||| | | Sbjct 4129 ATGCAGATCTTTGTCAAAACCTTGACTGGAAAAACCATCACTCTCGAAGTCGAGCCGAGT 4070 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||||| ||||| | |||||||| ||||| || | ||||| Sbjct 4069 GACACCATTGAGAACG-TCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCA 4011 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || || ||||| || || | ||||| ||| ||||||||| Sbjct 4010 GCAGAGATTGATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAA 3951 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| || |||| || ||||| || Sbjct 3950 TATCCAGAAAGAATCCACTCTCCATCTTGT 3921 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || ||||||||||| |||| || || ||| Sbjct 4813 ATGCAGATTTTCGTGAAGACCTTGACTGGAAAAACCATCACTCTCGAAGTTGAGCCCAGT 4754 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||||| ||||| | |||||||| |||||||| | || || Sbjct 4753 GACACCATTGAGAACG-TCAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCAGATCA 4695 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| | ||||| | ||| || || ||||| || || | || ||||| |||||||| Sbjct 4694 GCAAAGGCTCATTTTCGCCGGGAAGCAGCTTGAAGATGGCCGTACCCTTTCAGACTACAA 4635 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | || || || || || || | | ||||| ||| Sbjct 4634 TATCCAGAAAGAGTCAACCCTCCACCTTGTCCTGAGGCTCAGGGGAGGC 4586 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||||||||| || | || || ||| ||| Sbjct 5269 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATTACTCTAGAGGTGGAACCCAGT 5210 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||||| || || | |||||||||||||||||| | ||||| Sbjct 5209 GACACTATTGAAAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 5151 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | || | ||| || || || || || || | || || || || || || Sbjct 5150 GCAGAGGTTGATTTTCGCCGGGAAGCAACTTGAAGATGGCCGTACTCTGTCAGATTATAA 5091 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| | || || || || ||| |||| |||||||| ||| Sbjct 5090 CATCCAGAAAGAGTCAACCCTCCACCTTGTGCTGCGTTTGAGGGGAGGC 5042 >seq8 Length=3271537 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| | || || || || || || || || ||||||||| | || || || || Sbjct 1336278 AAAATGCAGGTTTTTGTGAAGACCCTGACAGGAAAGACCATCACCCTGGAGGTGGAGCCC 1336337 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||||| | | | | | |||| || || | || ||||| |||||||| | ||| Sbjct 1336338 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGAGAAAGAAGGCATCCCGCCTGAC 1336397 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || || || |||||||| || | ||||| || |||||| Sbjct 1336398 CAGCAGAGGCTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 1336457 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || |||||||||||| |||| |||| || || ||||| ||||||| ||| Sbjct 1336458 AATATCCAGAAGGAGTCCACCTTGCACCTGGTTTTGCGACTGAGGGGTGGC 1336508 >seq14 Length=14352415 Score = 109 bits (120), Expect = 6e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 40716 GGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG-TGCAAACGCTCAAGGAAA 40774 |||||||||||||||| | || || || ||| ||||| | || || | |||||| | Sbjct 9652077 GGGCAAAACCATCACCTTGGAGGTGGAGCCCAACGACACCACTGAGAATG-TCAAGGCCA 9652019 Query 40775 AAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAAC 40834 |||| | |||||||| || ||||| | |||||||| | || |||| || || || | Sbjct 9652018 AAATCCAGGACAAAGAAGGGATCCCTCCCGACCAGCAGCATCTAATCTTTGCAGGGAAGC 9651959 Query 40835 AGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATC 40894 ||||||| || | || ||| ||| |||||||||||| |||| ||| |||| || || Sbjct 9651958 AGCTGGAGGATGGGCACACTCTCTCAGACTACAACATCTAGAAAGAGTCCACCCTCCACT 9651899 Query 40895 TAGTGTTGC 40903 | ||| ||| Sbjct 9651898 TGGTGCTGC 9651890 >seq6 Length=80741955 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || ||||||||||| | || | ||||| || ||| Sbjct 46145245 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAAACAAGTACGTTGGACGTGGAGCCCAGT 46145186 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| ||| | | ||||| ||||| | |||||||| || ||||| | ||||| Sbjct 46145185 GACACCGTTGAGAACATCAAGACCAAAATCCAGGACAAAGAAGGGATCCCTCCCAACCAG 46145126 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 | | || |||| || || | |||||||| |||| || ||| ||| |||||||| Sbjct 46145125 TAGTGTCTGATCTTTGCAGGTTAGCAGCTGGAGGACGGGCACACTCTCTCAGACTACAAT 46145066 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGC 40903 |||||||| | |||| || || | ||||||| Sbjct 46145065 ATCCAGAAAACGTCCACCCTCCACTTGGTGTTGC 46145032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515177615370320