Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3801 127 2e-24 seq14 93.3 4e-14 seq6 91.5 1e-13 >seq3801 Length=8881 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || ||||| || || |||||||| ||| | |||||| ||| Sbjct 3689 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATC 3748 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||||| || || || ||||||| | |||||| || || || ||||| |||||||| Sbjct 3749 TTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTC 3808 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| || || | || | |||||| || |||||| |||| || | || Sbjct 3809 TTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACTTCGAGAGTGATGGT 3868 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || |||||||||||||| Sbjct 3869 CTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 100 bits (110), Expect = 2e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || |||||||| || ||||||||||| | |||||| ||| || | Sbjct 5290 CAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCTTCAA 5349 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| || ||| |||| | | |||||| || || || ||||| || |||||| | Sbjct 5350 GCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGA 5409 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || || || | ||| | ||||| | || | || ||||| | ||| | || ||| Sbjct 5410 TCTTGGCCTTGACGTTTTCAATAGTGTCGCTTGGT-TCAACCTCCAGGGTGATGGTCTTG 5468 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||| || ||||||||||| Sbjct 5469 CCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 |||| || | ||||| || |||||||| || || ||||| || | || || | Sbjct 4599 CTCAGGACAAGGTGGAGGGTTGACTCTTTCTGGATATTGTAGTCTGAAAGGGTACGGCCA 4658 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || ||||| || || ||| | ||||| | |||||||| ||||| ||||| || ||| Sbjct 4659 TCTTCAAGCTGCTTCCCGGCGAAAATGAGCCTTTGCTGATCTGGAGGGATGCCTTCTTTG 4718 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| ||||| || || | || | |||||| || ||| || |||| || | Sbjct 4719 TCTTGGATTTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCGAGAGTGATG 4778 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| || |||| || || || |||||||||||| || Sbjct 4779 GTTTTTCCAGTCAAGGTCTTCACGAAAATCTGCATGCCT 4817 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| ||||||| || || ||||| || || ||||| ||| | ||| || ||| Sbjct 4829 CAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTACGGCCATC 4888 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || ||| | || | | |||||||| || || ||||| || ||||| Sbjct 4889 TTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGGATGCCTTCTTTGTC 4948 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCG 118704 | || || || || | ||| | |||||| | || | || ||||| | || | | Sbjct 4949 TTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGT-TCCACCTCTAGTGTGATGG 5007 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | ||||| |||| ||||| ||||||||||||||| || Sbjct 5008 TCTTGCCCGTCAAGGTTTTGACAAAAATCTGCATGCCT 5045 >seq14 Length=14352415 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||||| || |||||||| | |||||||| || | |||| || ||| Sbjct 9651891 CAGCACCAAGTGGAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGTGCCCATC 9651950 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || || |||| ||| ||||||| |||||||| || || || ||||| Sbjct 9651951 CTCCAGCTGCTTCCCTGCAAAGATTAGATGCTGCTGGTCGGGAGGGATCCCTTCTTTGTC 9652010 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||||| || || | || |||||| || ||| ||||| | ||| | || Sbjct 9652011 CTGGATTTTGGCCTTGACATTCTCAGTGGTGTCGTTGGGCTCCACCTCCAAGGTGATGGT 9652070 Query 118706 TTTGCC 118711 |||||| Sbjct 9652071 TTTGCC 9652076 >seq6 Length=80741955 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||||| || ||| ||| || || ||||| || | |||| || || Sbjct 46145033 CAACACCAAGTGGAGGGTGGACGTTTTCTGGATATTGTAGTCTGAGAGAGTGTGCCCGTC 46145092 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT- 118644 ||| ||||| | || || |||| |||| || ||| | |||||| || || || |||| Sbjct 46145093 CTCCAGCTGCTAACCTGCAAAGATCAGACACTACTGGTTGGGAGGGATCCCTTCTTTGTC 46145152 Query 118645 CTGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| | |||| || || | | || |||||||| || ||| || || | || Sbjct 46145153 CTGGA--TTTTGGTCTTGATGTTCTCAACGGTGTCACTGGGCTCCACGTCCAACGTACTT 46145210 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| ||||| || || ||||| ||||||||| Sbjct 46145211 GTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 46145246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433796259852244