Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1 136 7e-27 seq254 84.2 4e-11 >seq1 Length=263920458 Score = 136 bits (150), Expect = 7e-27 Identities = 135/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| | || ||||||| ||| | | |||| ||||| || || ||| ||||||| || Sbjct 199395186 GATAGCTGGGGCTTTATGGTGGTATTTTGTATCAAAAGGAATTGAGTACCTGGATACAGT 199395245 Query 51945 ATTTTTCATACTTAGGAAA-AAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATT 52003 |||||||| |||| |||| |||||||| || | ||||||||||| || || ||||||| Sbjct 199395246 GTTTTTCAT-CTTAAGAAAGAAATTTAACCAAATCAGTTTTCTACATGTCTACCATCATT 199395304 Query 52004 TTACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || ||||||||| || | ||||| || || |||||| |||| ||||| || Sbjct 199395305 ACACCATGTTTACTTTATGGTGGATCGGCATAAAATGGGTTGCAGGAGGACA 199395356 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 52189 CAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCA 52248 || ||||| ||| | | || || || || ||||| ||||| || ||||| || || || Sbjct 199401832 CAATTCCACATAACGCTTGGTCACACGGCCATGTCTATTTATATTGATTGTCCCTTCCCT 199401891 Query 52249 AAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTAAC 52308 |||||||| || ||| || ||| ||||| |||| | |||||| | |||||||||||| Sbjct 199401892 AAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACTTTCATTGTTCTGTTTGGTAAC 199401951 Query 52309 TTCTATTTTAGAACATACAAGA 52330 ||||||| | | |||||||||| Sbjct 199401952 TTCTATTATCGGACATACAAGA 199401973 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||| ||||| || | ||||||||||| || ||| ||||||||| || ||||| Sbjct 199399038 GCTTTTTTCGGAGCCCAAATTAATTCTTTTATTCACGTTGTTATGTACATGTACTATGGA 199399097 Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || || ||||| || | ||| ||||| || ||||||||||| || | |||||| Sbjct 199399098 CTAGCTGCCTGTGGCCCAAAATTCCACAAGTACCTTTGGTGGAAACGATACTTGACTATA 199399157 Query 52177 ATGCAGTTGGTA 52188 |||||| ||||| Sbjct 199399158 ATGCAGCTGGTA 199399169 >seq254 Length=783762 Score = 84.2 bits (92), Expect = 4e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 189470 CAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATA 189529 |||||||| ||||| || |||||| | || | || ||||||||||| ||||| || Sbjct 222181 CAGATGGTTCACGAAGGGAAGATGCATGGCTTCCTGCGGATGTATTGGGCCAAGAAAATC 222240 Query 189530 CTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGTATCTATTTGAACAACAAG 189589 || |||||||| | | || ||||| || |||| | || ||||| | || || Sbjct 222241 CTGGAATGGACCAATTCTCCCGAAGAGGCCTTGAAATTCAGCATCTACCTCAATGACCGC 222300 Query 189590 TACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628 |||||||| || ||| |||||| ||||| || || ||| Sbjct 222301 TACGAACTGGATGGCCGGGATCCCAACGGTTATGTGGGT 222339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923122286478280