Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3801 122 6e-23 >seq3801 Length=8881 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | |||||||||||| | || || ||||| |||||||||||||| Sbjct 3675 CCGCCCCGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 3734 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || || || ||||||| ||||||||| ||| Sbjct 3735 AGAGTGCGGCCATCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 3794 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || || ||| | | | || | ||| | | ||||| Sbjct 3795 ATGCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACT 3854 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || | |||||||| ||||||||||| || |||||||| ||||||||| ||| Sbjct 3855 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCATCCCTC 3906 Score = 111 bits (122), Expect = 1e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| | ||| | ||| ||||||||| ||||||||||||||||| |||| | || Sbjct 4374 AGCACTAAGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCT 4433 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 || | ||| ||||| || ||||| | | ||| ||||| | |||| | || ||| ||||| Sbjct 4434 TCAAGCTGTTTGCCGGCAAAAATCAATCTCTGTTGGTCTGGCGGG-ATGCCCTCTTTGTC 4492 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||||||| | || | || | ||| | | ||| || || | ||||||| Sbjct 4493 TTGGAT-TTTTGCTTTCACATTCTCAATGGTGTCGCTTGGTTCCACTTCGAGAGTGATGG 4551 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || || ||||||||||| ||||| Sbjct 4552 TTTTTCCAGTCAGGGTCTTCACAAAGATTTGCAT 4585 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||| ||||| | ||| |||||||| |||||||||||||| || ||| | || Sbjct 5513 CAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATC 5572 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||| ||||| ||||| || | || ||||||||| ||| | || ||| ||||| Sbjct 5573 TTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 5632 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || || | |||||||| Sbjct 5633 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGAGTGATGGT 5692 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | || ||||||||||||||||| Sbjct 5693 CTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5725 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||| ||||| | || |||||||| ||||| || || ||||| |||| | || Sbjct 5057 CAGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTGACAGAGTACGGCCATC 5116 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||||| || |||||||| | || ||||||||| ||| | || ||| ||||| Sbjct 5117 TTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 5176 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | || | | ||| || || | || ||||| Sbjct 5177 TTGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCACCTCTAGAGTAATGGT 5236 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| || || || ||||||||||||||||| Sbjct 5237 TTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| || ||||| | ||| ||| ||||| ||||| || || ||||| ||| | || Sbjct 4145 CAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTATAATCTGACAGAGTGCGGCCATC 4204 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | |||||| || |||||||| | || ||||| || || | || ||| ||||| Sbjct 4205 TTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGAGGGATGCCCTCTTTGTC 4264 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || || ||| | || | || | || | | ||| || || | |||||||| Sbjct 4265 TTGGATTTTCGCCTTAACATTCTCAATGGTGTCACTTGGTTCCACTTCGAGAGTGATGGT 4324 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || ||||||||||||||||| Sbjct 4325 CTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 4357 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 |||| |||||| | ||| | || ||||||||| || ||||||||||| || |||| Sbjct 4824 AGCCGCAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTACGG 4883 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || || | |||||| || |||||||| | || ||||| || ||| | || || Sbjct 4884 CCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGGATGCCTTCT 4943 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| ||||| ||| | | | || | || | | ||| || || | ||| Sbjct 4944 TTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACCTCTAGTGTG 5003 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || | ||||| ||||| |||||||| Sbjct 5004 ATGGTCTTGCCCGTCAAGGTTTTGACAAAAATCTGCAT 5041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323046575949920