Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq1 98.7 9e-16 >seq4 Length=156502444 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 15887 TAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTT 15946 || || ||| ||||| || ||||||||| || ||| | | | ||| |||| | Sbjct 14024778 TAGAAGTCAGCATCTAAAGTAAACACATTGTCATTTGTTTCGGCCATCACTGCAAAACGC 14024719 Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| || ||||||||| ||||||||||| ||||||||||| || ||||| || ||| Sbjct 14024718 TGATACTCTGAAACTCTCTTCTCAAAGAAATTGGTTTTTCCTTCCAAAGAAATGTTCTCC 14024659 Query 16007 ATAAAATCAAAAGGATTTTTTG 16028 || ||||||||||| |||| || Sbjct 14024658 ATGAAATCAAAAGGGTTTTCTG 14024637 >seq1 Length=263920458 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | || || || || || || || ||||| || ||||| ||||| Sbjct 148006013 TCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTTTC 148006072 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||||||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 148006073 AACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCT 148006132 Query 16379 ACCAATCGCTCACC 16392 || | ||| || || Sbjct 148006133 ACTACTCGTTCCCC 148006146 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 |||||||| ||| ||| | |||||||| | || | ||||||||||||||| ||||| Sbjct 148002239 TTTGACATCACTCCCATCCTCTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTG 148002298 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | ||| ||||| ||||| || ||||| ||||| Sbjct 148002299 CCTTCCAGTGAGATATTCTCCATGAAGTCAAACGGATT 148002336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462474669500200