Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq249 421 5e-113 seq2 140 2e-28 >seq249 Length=841488 Score = 421 bits (466), Expect = 5e-113 Identities = 694/999 (69%), Gaps = 8/999 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687 ||||||||||| |||| |||||||||| ||| || ||||| | || ||||| Sbjct 269336 TACCTCAACATGACCAAGGACTGTGAGCTTTTCCGATCCAGCAGGAAATATATGGAGTTC 269395 Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || ||||| ||||| ||| ||| |||||||| || ||||| || ||| |||| || ||| Sbjct 269396 CCGCTGAGCAAAGAGGAGGAAGAGTTCCCCATCGCGTACTCCATCGTGCTCCACGACAAG 269455 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 | || | ||||| |||||| || | ||| | || ||||| |||||| | ||||| ||| Sbjct 269456 GTGGAGATGTTTGAGCGGCTGTTGAGGGCCATCTACGCCCCGCAGAACGTCTACTGCGTC 269515 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || | ||||| || | |||| |||| ||||| | || | |||||| Sbjct 269516 CATGTAGACGCCAAGTCTCCGCAACCTTTGCAAGAAGCGGTTCGGAGGATCGTGTCCTGC 269575 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || || |||||| ||||| ||| || | |||||| |||||||||||| ||| Sbjct 269576 TTTGGGAACGTCTTCCTGGCCTCCAAGCAGGAGCGGGTGGTGTATGCCTCCTGGAACAGG 269635 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987 || ||||| ||||||||||| ||||| ||| | |||| ||| | || ||| ||| Sbjct 269636 GTCCAAGCCGACCTGAACTGCATGGAGGACCTTCTCCGAAGCCCGGTCAAGTGGCGCTAC 269695 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 | || || || |||||||| ||| | ||||| |||||||| || ||||| |||| || Sbjct 269696 CTCCTCAACACCTGCGGGACCGACCTGCCCATCAAGACCAACGCGGAGATCGTCCAATCC 269755 Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107 || ||| || |||| || | ||||| |||||| | ||| || || |||| |||| Sbjct 269756 CTGAAGGTGCTGAACGGGAGGAACAACATGGAGGCGGAGAAGCCCTCGGAGTACAAAGCC 269815 Query 108108 aaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAG 108167 |||||||| || | | | || ||||| ||| | || || ||| | | |||| Sbjct 269816 GGCCGCTGGAAGTATCACCACGAAGTGACCGACTCCGTGGTCCGGACCCAGACGGAGAAG 269875 Query 108168 GACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGA 108227 |||||| || | | || ||||||||||||||||| ||||| | ||| | || Sbjct 269876 AGCCCTCCTCCGCAAAGTTCTCCCATGTTCACAGGGAACGCCTACGTGGTGCTCAGCCGG 269935 Query 108228 GCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTT----GAATGGGT 108283 | ||| ||||| ||| |||| | |||| || ||| |||| || ||| Sbjct 269936 GGCTTCGTCCAGCATCTCTTCCAAGACCC--GATGGTGAAG--CGGTTCATCGAGTGGTC 269991 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGAT 108343 |||||||||||| || |||||||| ||| |||||||||| || || || ||| || | Sbjct 269992 CAAAGACACCTACAGTCCCGACGAGCACATCTGGGCCACGCTGCATCGCATGCCGGGGGT 270051 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||| ||| || || | || ||||| | || | | ||||||| |||||||| || Sbjct 270052 GCCAGGCGGGGTCCCCTTCAACAGCAAGTTTGACCTGACGGACATGAACGCCATCGCGAG 270111 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 ||| || |||||| ||| |||||| || |||| || |||||| || || | || || Sbjct 270112 GCTGGTGAAGTGGTCCTACACCGAGGGGGACGTCACCAAGGGGGCCCCGTACCCGCCTTG 270171 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 | | || |||| || ||||| | || | || ||||| || || || ||||||| || Sbjct 270172 CACGGGGGTCCACAGGCGGGCCGTATGTACCTATGGGGCGGGTGATCTCCACTGGATGCT 270231 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCA 108583 | | | || || ||||| || ||||| |||||| | || || || |||| | | Sbjct 270232 CAACCAGCACCATCTCTTTGCCAACAAATTTGACTCCCAAGTTGACAATTCCGTCATTGA 270291 Query 108584 GTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 ||||| ||||| ||||| ||| | || |||| |||| Sbjct 270292 ATGCTTGGAAGAATACCTGCGTTACAAATCCATACATGG 270330 >seq2 Length=199619895 Score = 140 bits (154), Expect = 2e-28 Identities = 571/883 (65%), Gaps = 23/883 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || ||||| ||||| || ||| || |||||||| || || || || || ||| | || Sbjct 46166196 CCCCTGAGCAAAGAGGAAGCAGAATTTCCCATTGCTTATTCAATAGTAGTTCATCACAAA 46166137 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | ||||| |||| |||||||| | ||||| ||||||||| ||||| | Sbjct 46166136 ATTGACATGCTTGAAAGGCTTTTGCGAGCCATCTATGCACCTCAGAACTATTACTGCATT 46166077 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || ||| |||||| || || ||||| | || || || | ||| ||| ||| Sbjct 46166076 CATGTTGATAAGAAGTCTCCTGAATCTTTCCTGGCTGCAGTTAAAGGGATTGCTTCATGC 46166017 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || ||| | || || ||||| | ||| || || |||||||| ||| |||| Sbjct 46166016 TTTGGCAACATTTTTATTGCCAGCCAACTGGAAAGTGTTGTGTATGCCTCGTGGAGCAGA 46165957 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 |||||||||||||| ||||| ||| ||||| | || ||| | |||| | ||||||| Sbjct 46165956 GTGCAAGCTGACCTCAACTGCATGAAAGACCT-CTACAG-GAGGGGTGCGAACTGGAAGT 46165899 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 || | | || || || | || ||||| || ||||| || || || | | Sbjct 46165898 ACCTGATCAACCTTTGTGGTATGGATTTCCCTATCAAGACTAACCAGGAAATAATAGAGA 46165839 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTGAGTCCa 108102 || ||| | || ||| | || ||| |||| ||||| | ||||| | || Sbjct 46165838 AGCTGAAGGCCCTCAAAGGTGAAAATAGTTTGGAAACTGAGAAAATGCCTTCAAA---CA 46165782 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGA---CACACTGTACCCTACCAGCA 108159 | | || |||||| | | |||| || | || | | | || | | Sbjct 46165781 AGGAGGTACGGTGGAAAAAGCATCATGAAGTTATTGATGGTAAGGTAAAGAATATGGGAA 46165722 Query 108160 -AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTG-T 108217 ||| ||| | | ||| ||| ||| |||||| ||| | || | |||||| |||| | Sbjct 46165721 TAGA-CAAGCAGCATCCACCTCTCAATACACCCATTTTCTCTGGCAGTGCCTACTTTGTT 46165663 Query 108218 GGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGA 108277 | | ||| ||||| || |||| || || ||| | || || | | || Sbjct 46165662 GTTAGCAGGAG-GTTTGTTGAATATGTATTGGAGAACACCAACATCCTTGCTTTTATAGA 46165604 Query 108278 ATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCC 108337 ||||| |||||||| || || || || ||| || | ||||| || |||||||| ||| Sbjct 46165603 ATGGGCTAAAGACACGTACAGTCCTGATGAATACTTGTGGGCTACTCTTCAGCGAATTCC 46165544 Query 108338 GTGGA-TGCCTGGCTCTGT-TCCTAGCCA-CCCCAAGTATCACATCTCAGACATGACTGC 108394 || | | ||||| |||| ||| |||| || ||| | |||||||||||| || Sbjct 46165543 -TGAAGTTCCTGGAGCTGTCTCC--GCCAGTAATAAATATGATGTCTCAGACATGAACGC 46165487 Query 108395 CATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTA 108454 | |||||| | || |||||||| ||| ||||| ||||| | ||| || || || Sbjct 46165486 TCTGGCCAGGTTTGTTAAGTGGCATTACTTTGAGGGGGATGTGTCAAAGGGTGCCCCGTA 46165427 Query 108455 TGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTA 108514 | |||| ||| ||| || || | | | || | | || | || ||| || | Sbjct 46165426 TCCACCTTGCAGTGGGATACACATCCGCTCAGTGTGTGTCTTTGGAGTGGGAGACTTGAA 46165367 Query 108515 CTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||||| | | || || ||| |||| || |||||||||||| Sbjct 46165366 CTGGATGTTGCGAAAGCACCACTTCTTTGCCAACAAGTTTGAC 46165324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348241393095618