Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1 129 6e-25 seq4 86.0 6e-12 >seq1 Length=263920458 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||||| || ||||| || || || || | ||| ||||||| ||||| |||| Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | ||||||||||| | || || || ||||||||||| ||||| || ||||||||||| | Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 14346 CTATTAATCGTTCTCC 14361 ||| || |||||| || Sbjct 148006131 CTACTACTCGTTCCCC 148006146 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| |||||||||||||| || |||||||| || || ||||||||||| || ||||| Sbjct 148009354 ATGTAAGTATCAATAAGTAAACTGTACATTTCCGAATGGATGTTTTCCATGGCAATCTGG 148009413 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | |||||||| Sbjct 148009414 AAGCCATAGAAACAGCGAGCTTCTG 148009438 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13895 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13954 || || || || ||||| | |||||||| | || | ||||||||||| |||||||| Sbjct 148002239 TTTGACATCACTCCCATCCTCTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTG 148002298 Query 13955 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 ||||||||||| ||||| ||||| || ||||| ||||| Sbjct 148002299 CCTTCCAGTGAGATATTCTCCATGAAGTCAAACGGATT 148002336 >seq4 Length=156502444 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/120 (77%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 14589 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14648 |||| |||||||| || || ||||| ||||||||||||||||||| |||| | ||||| Sbjct 14016350 CCAAGTTTTCATTCACAATTCCATCGCTAGCTGCAAAAAATGCCAGGATGTGTGAAATAA 14016291 Query 14649 AGTATTGCTCTTC--ATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTAC 14706 | |||| |||||| ||| | || || ||||| | | || |||||||| || || || Sbjct 14016290 AATATTTCTCTTCTGATT--TCAGCTTGTTCCAGTGAGGGAAGTCCTTAGATAGGTCAAC 14016233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482306668680760