Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq514 123 2e-23 seq1 87.8 2e-12 >seq514 Length=269024 Score = 123 bits (136), Expect = 2e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||| ||| |||||||| || || ||||| || || ||||| ||||| || | Sbjct 181458 CCACCTCGTCATTGCTGGTGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGG 181399 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||||| || | ||||| || || ||||||||||||||||| | Sbjct 181398 TCCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGAG 181339 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| ||||| ||| ||||||||||| || Sbjct 181338 TGCCGGTCTCAGTCTGGGACTCGATGATGGC 181308 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || || ||||| ||||| || || |||| || || | ||| ||| |||||| | Sbjct 175471 TCATGAAGAGGTCCGGGATCCAGAGCGCAAAGAAGAGGTCCCTGGCCCGCTGCTCCTCCT 175412 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | ||||||||||| |||| |||| || || || | ||| ||||| |||||||||| Sbjct 175411 TCCCGGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCAAAGTGCCAAGGCTCGAGGT 175352 Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495 | | |||||| || ||||||| || Sbjct 175351 AGATGGCAAAGGCCCCCGGTCGCT 175328 >seq1 Length=263920458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 |||||||||||| | | || ||||| | | ||||| || ||||| ||| | || | Sbjct 148013633 GATGAACCACTTCTTCGGGATAATCCACACCGCTTTGTGATCTTTCCCATTCAGTACCAT 148013574 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAG 57624 ||||||||| | |||||||| || |||||||| || |||||||| | ||||| |||| Sbjct 148013573 GACATTTGGCAAATGTACAAGAAAGCAGAAGCTTCATTTTGGACAGCAGAAGAGGTAG 148013516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445730421079440