Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 132 6e-26 seq514 91.5 2e-13 >seq1 Length=263920458 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | ||| || || || |||||||| ||||| || || ||||||| Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||||||||| || || || || |||||||||||||||||||||||||||||||||| Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 33724 C 33724 | Sbjct 148006131 C 148006131 Score = 107 bits (118), Expect = 2e-18 Identities = 107/138 (78%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTTT 33292 ||| || || |||| || | ||| ||||||| | || ||||| |||||||| | Sbjct 148002199 TTAGAAATCTGCATCCAAGGTGAAAGAATTGTCTACAGCTTTTGACATCACTCCCATCCT 148002258 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 || ||||| || ||||| ||||| || ||||||||||| ||||||| ||| ||||| || Sbjct 148002259 CTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTGCCTTCCAGTGAGATATTCTC 148002318 Query 33353 CATGAAATCAAACGGATT 33370 |||||| ||||||||||| Sbjct 148002319 CATGAAGTCAAACGGATT 148002336 Score = 82.4 bits (90), Expect = 1e-10 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||| | |||||||| || | | ||| |||||||||||||| |||||||| ||||| Sbjct 148009348 TCTTTGATGTAAGTATCAATAAGTAAACTGTACATTTCCGAATGGATGTTTTCCATGGCA 148009407 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 ||||| || || |||||||| | ||| || || | || | |||| Sbjct 148009408 ATCTGGAAGCCATAGAAACAGCGAGCTTCTGTGACTTGGATTTCT 148009452 >seq514 Length=269024 Score = 91.5 bits (100), Expect = 2e-13 Identities = 129/179 (72%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 63994 CCTCCA-TCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATT 64052 |||||| |||| |||| || | ||| || || |||||||| || || || | ||| || Sbjct 165391 CCTCCACTCAC--CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATC 165334 Query 64053 CTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCT 64112 |||||||| || |||||||| || || || | || || ||||| || | || || Sbjct 165333 CTGGCGGCAAGGATGGCATAGTCGGGGTGCTTAGTGGTCAGGGTGGCGGCAGTCTCAGCA 165274 Query 64113 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||||||||||||| ||| || || || || ||| | || | || || || || ||||| Sbjct 165273 GCCAGAGTGTCCAGTTCCACAGTGGTGACACCACTGTAGAGGCCCTGGATCACTTTCAT 165215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629766765846960