Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1 125 7e-24 seq4 86.0 6e-12 >seq1 Length=263920458 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || |||||||| || || || | ||| ||||||| ||||| ||||| Sbjct 148006013 TCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTTTC 148006072 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||||||||||| ||||| ||||| |||||||| ||||| || || || ||||| ||| Sbjct 148006073 AACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCT 148006132 Query 11774 ACTACTCTTTCTCC 11787 ||||||| ||| || Sbjct 148006133 ACTACTCGTTCCCC 148006146 >seq4 Length=156502444 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || |||||||||||||| ||||| |||||||||| |||||| || || ||||| Sbjct 14018136 TAAGTGTCTATTAATAAACTGTACATCTCTGAATGAACATTTTCGATTAGGATCTGAAAG 14018077 Query 11960 CCATAGAAACATCGTGCCTCTG 11981 ||||||||||| || ||||||| Sbjct 14018076 CCATAGAAACAACGAGCCTCTG 14018055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468486984192080