Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 129 8e-25 seq77 102 1e-16 seq514 87.8 2e-12 >seq1 Length=263920458 Score = 129 bits (142), Expect = 8e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| ||||| || |||||||| ||||| || || ||||||| Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||||||||| || ||||| || || |||||||| |||||||||||||| ||||||| Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 36300 C 36300 | Sbjct 148006131 C 148006131 Score = 95.1 bits (104), Expect = 2e-14 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 35812 TTAAAAATCAACATCTAGAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTTT 35868 ||| ||||| |||| | | ||| ||||||| | || ||||| |||||||| | Sbjct 148002199 TTAGAAATCTGCATCCAAGGTGAAAGAATTGTCTACAGCTTTTGACATCACTCCCATCCT 148002258 Query 35869 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 35928 || ||||| || ||||| ||||| || ||||||||||| ||||| | ||| ||||| || Sbjct 148002259 CTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTGCCTTCCAGTGAGATATTCTC 148002318 Query 35929 CATGAAATCGAATGGATT 35946 |||||| || || ||||| Sbjct 148002319 CATGAAGTCAAACGGATT 148002336 >seq77 Length=2022075 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | |||| || | ||| ||| |||| |||||||||||||| || Sbjct 310408 TTACTTTTTATTAAAGGCTTCTAACAAACGTAGCAGGTGCAGAAACAGATTGATGATGTC 310467 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||| |||| ||||| | || | | || |||||||| ||||| || || |||| Sbjct 310468 CAAATAGAGGTTGATTGCCGCCAGTATGTATTCTTCAGGGGAGAGTTTGTGCATTAACAG 310527 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || ||||||||||| || || || ||||| ||||| || || ||||| | |||| Sbjct 310528 ATGAGTGTCATAGATGATAAAGCCACAGAACACAAGAGCACCCGCAGCAGCAAACACCAC 310587 Query 9407 CTCCACTGTTTCACTTTGCACAAA 9430 ||| || |||||| || | ||| Sbjct 310588 CTCTACGACTTCACTGTGGAAAAA 310611 >seq514 Length=269024 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 66787 CCTCCA-TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATT 66845 |||||| |||| |||| || | ||| || || || ||||| || || || ||||| || Sbjct 165391 CCTCCACTCAC--CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATC 165334 Query 66846 CTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCT 66905 || ||||| | |||||||| || || || | || || ||||| || | || || Sbjct 165333 CTGGCGGCAAGGATGGCATAGTCGGGGTGCTTAGTGGTCAGGGTGGCGGCAGTCTCAGCA 165274 Query 66906 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||||||||||||| ||| || || || || ||| | || | || ||||| || ||||| Sbjct 165273 GCCAGAGTGTCCAGTTCCACAGTGGTGACACCACTGTAGAGGCCCTGGATCACTTTCAT 165215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658119677227880