Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3801 102 8e-17 >seq3801 Length=8881 Score = 102 bits (112), Expect = 8e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| ||||| |||||||| || Sbjct 5301 GTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCTTCAAGCTGTTTGCCG 5360 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| | ||||| || || || |||||||||||||| ||| || || Sbjct 5361 GCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTG 5420 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | |||||| | || || ||||| | ||| | |||||||| ||||| ||| Sbjct 5421 ACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTT 5480 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 5481 TTCACGAAAATCTGCATACCT 5501 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||||| || | ||||| || |||||||| || ||||| || ||| | |||| Sbjct 5508 AAACGCAGCACAAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGG 5567 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| |||||||| || || |||||| | ||||| || || || ||||| ||| Sbjct 5568 CCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCT 5627 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | ||||| | ||||||||||| | || Sbjct 5628 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGAGTG 5687 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||||||| ||||| || || || || || ||||| Sbjct 5688 ATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | |||| || | ||| | || ||||| || || ||||| || ||| Sbjct 3674 GCCGCCCCGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3733 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||||||||| || || ||| |||| || | ||||| || || || Sbjct 3734 AAGAGTGCGGCCATCTTCGAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGG 3793 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| |||||| || | | || | |||||| ||||||| || Sbjct 3794 GATGCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGAC 3853 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | || || || || || ||||| Sbjct 3854 TTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 3901 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| |||||||| | || || ||||| || || || || ||| | || | Sbjct 4827 CGCAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTACGGCCA 4886 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || || | |||| | ||||||||| || || |||||||||||| Sbjct 4887 TCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGGATGCCTTCTTTG 4946 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| | || |||||||| | || | Sbjct 4947 TCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACCTCTAGTGTGATG 5006 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| ||||| || || || ||||| Sbjct 5007 GTCTTGCCCGTCAAGGTTTTGACAAAAATCTGCAT 5041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496023961434400