Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 138 2e-27 seq4 100 4e-16 seq514 96.9 5e-15 >seq1 Length=263920458 Score = 138 bits (152), Expect = 2e-27 Identities = 105/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| ||||| || |||||||| ||||| || || ||||||| Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||||||||| || ||||| || || ||||||||||||||||||||||| ||||||| Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 50102 CAAC 50105 | || Sbjct 148006131 CTAC 148006134 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| | || ||||| || ||||| ||||| || ||||||||||| ||| Sbjct 148002242 GACATCACTCCCATCCTCTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTGCCT 148002301 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATT 49748 |||| ||| ||||| |||||||| ||||||||||| Sbjct 148002302 TCCAGTGAGATATTCTCCATGAAGTCAAACGGATT 148002336 >seq4 Length=156502444 Score = 100 bits (110), Expect = 4e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 49993 CTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT 50052 ||||| ||||| ||||| || ||||| || ||||| || || | || || |||||||| Sbjct 14021228 CTAATAAGTTCATTGGAGAAAGTGAGACCCGGCATCAGTCCTCTTTTCTTGAGCCAAAAG 14021169 Query 50053 ATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTC 50112 || | ||||| | ||||| |||||||||||||| || | |||||| ||||| | |||| Sbjct 14021168 ATAGCTGCAAAGGCACCAGAGAAGAAGATTCCTTCAACCGAGGCAAAAGCAACCACTCTC 14021109 Query 50113 TCTCC 50117 || || Sbjct 14021108 TCCCC 14021104 >seq514 Length=269024 Score = 96.9 bits (106), Expect = 5e-15 Identities = 130/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 80666 CCTCCA-TCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATT 80724 |||||| |||| |||| || | ||| || || |||||||| || || || ||||| || Sbjct 165391 CCTCCACTCAC--CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATC 165334 Query 80725 CTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCT 80784 |||||||| | |||||||| || || || | || || ||||| || | || || Sbjct 165333 CTGGCGGCAAGGATGGCATAGTCGGGGTGCTTAGTGGTCAGGGTGGCGGCAGTCTCAGCA 165274 Query 80785 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 ||||||||||||| ||| || || || || ||| | || | || ||||| || ||||| Sbjct 165273 GCCAGAGTGTCCAGTTCCACAGTGGTGACACCACTGTAGAGGCCCTGGATCACTTTCAT 165215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718210826729480