Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1 132 5e-26 seq4 87.8 2e-12 >seq1 Length=263920458 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || ||||| || || || || | ||| ||||||| ||||| |||| Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||||||||| | ||||| || ||||||||||| ||||| || ||||||||||| | Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 14014 CTATTAATCGTTCTCC 14029 ||| || |||||| || Sbjct 148006131 CTACTACTCGTTCCCC 148006146 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| | |||||||| | || | ||||||||||| |||||||| Sbjct 148002239 TTTGACATCACTCCCATCCTCTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTG 148002298 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 ||||||||||| ||||| ||||| || ||||| ||||| Sbjct 148002299 CCTTCCAGTGAGATATTCTCCATGAAGTCAAACGGATT 148002336 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| |||||||||||||| || |||||||| || || ||||||||||| || ||||| Sbjct 148009354 ATGTAAGTATCAATAAGTAAACTGTACATTTCCGAATGGATGTTTTCCATGGCAATCTGG 148009413 Query 14202 AAACCATAAAAGCATCTAGCTTC 14224 || ||||| || || | |||||| Sbjct 148009414 AAGCCATAGAAACAGCGAGCTTC 148009436 >seq4 Length=156502444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 |||| |||||||| || || ||||| ||||||||||||||||||| |||| | ||||| Sbjct 14016350 CCAAGTTTTCATTCACAATTCCATCGCTAGCTGCAAAAAATGCCAGGATGTGTGAAATAA 14016291 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTAC 14374 | |||| |||||| || || || ||||| | | || |||||||| || || || Sbjct 14016290 AATATTTCTCTTCTGATTTCAGCTTGTTCCAGTGAGGGAAGTCCTTAGATAGGTCAAC 14016233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479689279953800