Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1 129 6e-25 seq4 96.9 3e-15 >seq1 Length=263920458 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || ||||| || || || || | ||| ||||||| ||||| |||| Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | ||||||||||| | || || || ||||||||||| ||||| || ||||||||||| | Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 13802 CTATTAGTCGTTCTCC 13817 ||| || |||||| || Sbjct 148006131 CTACTACTCGTTCCCC 148006146 Score = 91.5 bits (100), Expect = 1e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| |||||||||||||| || |||||||| || || |||||||| || || ||||| Sbjct 148009354 ATGTAAGTATCAATAAGTAAACTGTACATTTCCGAATGGATGTTTTCCATGGCAATCTGG 148009413 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | |||||||| Sbjct 148009414 AAGCCATAGAAACAGCGAGCTTCTG 148009438 >seq4 Length=156502444 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 ||||||||||||| ||||| ||||| ||||||||||||||||||| |||| | ||||| Sbjct 14016350 CCAAGTTTTCATTCACAATTCCATCGCTAGCTGCAAAAAATGCCAGGATGTGTGAAATAA 14016291 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTAC 14162 | |||| |||||| || || || ||||| | | || |||||||| || || || Sbjct 14016290 AATATTTCTCTTCTGATTTCAGCTTGTTCCAGTGAGGGAAGTCCTTAGATAGGTCAAC 14016233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478550171901480