Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 seq514 100 4e-16 seq4 93.3 6e-14 >seq1 Length=263920458 Score = 141 bits (156), Expect = 1e-28 Identities = 104/121 (86%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| ||||| || |||||||| ||||| || || ||||||| Sbjct 148006011 CCTCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTT 148006070 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | |||||||||||| ||||| || || ||||||||||||||||||||||| ||||||| Sbjct 148006071 TCAACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 148006130 Query 42207 C 42207 | Sbjct 148006131 C 148006131 Score = 104 bits (114), Expect = 3e-17 Identities = 106/138 (77%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTTT 41775 ||| || || |||| || | ||| ||||||| | || ||||| |||||||| | Sbjct 148002199 TTAGAAATCTGCATCCAAGGTGAAAGAATTGTCTACAGCTTTTGACATCACTCCCATCCT 148002258 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || ||||| || ||||| ||||| || |||||||| || ||||||| ||| ||||| || Sbjct 148002259 CTGATATTCTCCGACACGCTTTTCAAAGAAATTAGTTTTGCCTTCCAGTGAGATATTCTC 148002318 Query 41836 CATGAAATCAAACGGATT 41853 |||||| ||||||||||| Sbjct 148002319 CATGAAGTCAAACGGATT 148002336 >seq514 Length=269024 Score = 100 bits (110), Expect = 4e-16 Identities = 131/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 72749 CCTCCA-TCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATT 72807 |||||| |||| |||| || | ||| || || |||||||| || || || ||||| || Sbjct 165391 CCTCCACTCAC--CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATC 165334 Query 72808 CTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCT 72867 |||||||| || |||||||| || || || | || || ||||| || | || || Sbjct 165333 CTGGCGGCAAGGATGGCATAGTCGGGGTGCTTAGTGGTCAGGGTGGCGGCAGTCTCAGCA 165274 Query 72868 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||||||||||||| ||| || || || || ||| | || | || ||||| || ||||| Sbjct 165273 GCCAGAGTGTCCAGTTCCACAGTGGTGACACCACTGTAGAGGCCCTGGATCACTTTCAT 165215 >seq4 Length=156502444 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| | ||||| | ||| ||||| || ||||| || ||||| || || | || || Sbjct 14021237 TCATCACGGCTAATAAGTTCATTGGAGAAAGTGAGACCCGGCATCAGTCCTCTTTTCTTG 14021178 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 |||||||| |||| ||||| | ||||| |||||||||||||| || | ||||| ||| Sbjct 14021177 AGCCAAAAGATAGCTGCAAAGGCACCAGAGAAGAAGATTCCTTCAACCGAGGCAAAAGCA 14021118 Query 42209 ATAAGTCTCTCTCC 42222 | | |||||| || Sbjct 14021117 ACCACTCTCTCCCC 14021104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671085030677320