Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3801 100 2e-16 >seq3801 Length=8881 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| ||||| || ||||||||||| ||| | | | ||||| | || Sbjct 5294 ATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCTTCAAGCTG 5353 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| ||| | ||||| | || ||||| || || ||||||||||| || || Sbjct 5354 TTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTT 5413 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || |||| || || ||||| ||| || || | ||| ||||| || || || Sbjct 5414 GGCCTTGACGTTTTCAATAGTGTCGCTTGGTTCAACCTCCAGGGTGATGGTCTTGCCAGT 5473 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || ||||| |||||| Sbjct 5474 CAAGGTTTTCACGAAAATCTGCATA 5498 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| || |||||||| ||||| || || ||||| ||| ||| | | | ||||| Sbjct 4833 ACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTACGGCCATCTTCA 4892 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | ||||| | ||| || || || || ||||||||||| Sbjct 4893 AGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGG 4952 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || |||| ||||| || || ||| || |||| || ||||| || Sbjct 4953 ATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCCACCTCTAGTGTGATGGTCTTG 5012 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||||| |||||||| ||||| Sbjct 5013 CCCGTCAAGGTTTTGACAAAAATCTGCAT 5041 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || ||||| | | || | || ||||| || ||||| || ||||| ||||| Sbjct 5041 TGCCTCCCCTCAAACGCAGCACAAGGTGGAGGGTTGACTCTTTCTGGATGTTATAATCTG 5100 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | ||||| | ||| || || ||| | ||||| | || ||||| | Sbjct 5101 ACAGAGTACGGCCATCTTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCTGGGG 5160 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || |||||||| || ||| ||| || |||| || || || || ||| | Sbjct 5161 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCACTGGGTTCCA 5220 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||| ||||||||||| || ||||| || || ||||| || ||||| Sbjct 5221 CCTCTAGAGTAATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| ||||| || || ||||| ||| ||| | | | ||||| | || Sbjct 3926 ATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCTTCAAGCTG 3985 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | ||||| | || ||||| ||||| ||||||||||| ||||| Sbjct 3986 CTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTT 4045 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| || || || || || | || |||||||| || || Sbjct 4046 GGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGTTTTTCCAGT 4105 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| || ||||| Sbjct 4106 CAAGGTTTTGACAAAGATCTGCAT 4129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362150698421037