Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3801 87.8 1e-12 seq8 84.2 1e-11 >seq3801 Length=8881 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || | ||||| ||| | ||| | || |||||||| || || |||||||| || Sbjct 5271 CCTCCCCTGAGCCGCAGCACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCTGAG 5330 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || | || || | || || || || || || | |||||||| | ||| Sbjct 5331 AGAGTGCGGCCATCTTCAAGCTGTTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 5390 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || | | | ||| || || ||| ||| |||||| | |||| | Sbjct 5391 ATGCCTTCTTTGTCTTGGATCTTGGCC---TTGACGTTTTCAATAGTGTCGCTTGGTTCA 5447 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || || | ||||| |||||||| ||||| Sbjct 5448 ACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5497 >seq8 Length=3271537 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||| ||||| || ||||| || || |||||||| ||||| | | || | Sbjct 1336495 CGCAAAACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA 1336436 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| || ||| || | | |||||||| | || ||||||||||| Sbjct 1336435 TCTTCCAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCTTCTTTC 1336376 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| |||||| |||| | || ||||| || Sbjct 1336375 TCCTGGATCTTGGCC---TTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 1336319 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || ||||| || || || || || |||| ||||| || Sbjct 1336318 ATGGTCTTTCCTGTCAGGGTCTTCACAAAAACCTGCATTTT 1336278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318752513896386