Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq4 89.7 4e-13 >seq1 Length=263920458 Score = 111 bits (122), Expect = 1e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || || || || || || ||||| || ||||| ||||| Sbjct 148006013 TCATCTCTACTGATCAGTTCATTGGAGAAAGTGAGTCCAGGCATCAGACCTCGCTTTTTC 148006072 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||||||||||| ||||| ||||| ||||| || |||||||| ||||| ||||| ||| Sbjct 148006073 AACCAAAATATAGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCT 148006132 Query 13295 A 13295 | Sbjct 148006133 A 148006133 >seq4 Length=156502444 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 13167 GCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTC 13226 ||| | ||||||| | || || || || || || || || ||||||||||| || |||| Sbjct 14021245 GCATTACTTCATCACGGCTAATAAGTTCATTGGAGAAAGTGAGACCCGGCATCAGTCCTC 14021186 Query 13227 GTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTG 13286 ||| || | |||||| ||||| ||||| | ||| || || || ||||||||||| | | Sbjct 14021185 TTTTCTTGAGCCAAAAGATAGCTGCAAAGGCACCAGAGAAGAAGATTCCTTCAACCGAGG 14021126 Query 13287 CAAACGC 13293 |||| || Sbjct 14021125 CAAAAGC 14021119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430948483974714