Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anolis_20carolinensis_20[refseq_20GCF_5F000090745.1_202011-01-10] 6,457 sequences; 1,799,143,587 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 163 7e-35 seq3801 158 3e-33 seq4 104 5e-17 >seq1 Length=263920458 Score = 163 bits (180), Expect = 7e-35 Identities = 134/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||| | | || |||||||| || ||||| ||||| | || |||||| Sbjct 199395196 GCTTTATGGTGGTATTTTGTATCAAAAGGAATTGAGTACCTGGATACAGTGTTTTTCATC 199395255 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || ||||||||||||| ||||| |||||||||||||| || ||||||| || |||||| Sbjct 199395256 TTAAGAAAGAAATTTAACCAAATCAGTTTTCTACATGTCTACCATCATTACACCATGTTT 199395315 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 ||||| | ||||| || || |||||| | ||||||||||||| Sbjct 199395316 ACTTTATGGTGGATCGGCATAAAATGGGTTGCAGGAGGACAAG 199395358 Score = 107 bits (118), Expect = 4e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195 |||| || ||||| || |||||||| || |||||||| || |||||||| |||| |||| Sbjct 148006136 TAGTAGCCTTTGCTGCAGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCTATATTTT 148006077 Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255 ||||||| || |||| || ||||| ||| | |||||||| || ||| |||| || || | Sbjct 148006076 GGTTGAAAAAGCGAGGTCTGATGCCTGGACTCACTTTCTCCAATGAACTGATCAGTAGAG 148006017 Query 269256 ACGA 269259 | || Sbjct 148006016 ATGA 148006013 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 269485 ATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAA 269544 ||| || | ||| ||||||||| || ||||||||||| ||| | ||||| || |||| Sbjct 148002349 ATACAAAGCTGAGAATCCGTTTGACTTCATGGAGAATATCTCACTGGAAGGCAAAACTAA 148002290 Query 269545 TTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGA 269604 |||||| || ||||| || | | ||||||| ||||| || ||||| | | ||| Sbjct 148002289 TTTCTTTGAAAAGCGTGTCGGAGAATATCAGAGGATGGGAGTGATGTCAAAAGCTGTAGA 148002230 Query 269605 AAATATTTTCACTACAGATGCAGAATTCTAA 269635 ||| |||||| |||||||| |||||| Sbjct 148002229 CAATTCTTTCACCTTGGATGCAGATTTCTAA 148002199 >seq3801 Length=8881 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || |||| || |||| || | || ||||||||||| ||||| ||||| Sbjct 4812 ATGCCTCCCCTGAGCCGCAGCACTAAGTGGAGGGTGGATTCTTTCTGGATATTGTAGTCG 4871 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || || ||||| | ||| || ||||| || Sbjct 4872 GAGAGAGTACGGCCATCTTCAAGCTGCTTCCCGGCGAAAATCAACCTTTGCTGATCTGGG 4931 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| || || || ||||| | ||| || || ||||| Sbjct 4932 GGGATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTGTCACTTGGTTCC 4991 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||||| || ||||| || || | ||||| ||||| |||||||| Sbjct 4992 ACCTCTAGTGTGATGGTCTTGCCCGTCAAGGTTTTGACAAAAATCTGCAT 5041 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || ||||| | || ||||| || ||||| || Sbjct 4389 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCTTCAAGCTGTTTGCCG 4448 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | |||||||| || || || || || ||||| || || || |||||||| Sbjct 4449 GCAAAAATCAATCTCTGTTGGTCTGGCGGGATGCCCTCTTTGTCTTGGATTTTTGCTTTC 4508 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||||| ||||| || || || || || || || ||||| || || Sbjct 4509 ACATTCTCAATGGTGTCGCTTGGTTCCACTTCGAGAGTGATGGTTTTTCCAGTCAGGGTC 4568 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 4569 TTCACAAAGATTTGCAT 4585 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| ||||| | || ||||||||||| ||||| ||||| || ||||| | || || Sbjct 3917 AAGTACAAGATGGAGAGTGGATTCTTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATC 3976 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || || || ||||| | ||||| || || ||||| || |||||||| || Sbjct 3977 TTCAAGCTGCTTCCCGGCGAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTC 4036 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || || || || || || || | ||| || || || || || || || || || || Sbjct 4037 TTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTCGGCTCGACTTCGAGAGTGATGGT 4096 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | ||||| ||||| |||||||| Sbjct 4097 TTTTCCAGTCAAGGTTTTGACAAAGATCTGCAT 4129 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| || ||||| | || ||||| || ||||| || Sbjct 5529 GTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCAAGCTGTTTGCCG 5588 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | |||||| || || || || || || ||||| || || ||||| || || Sbjct 5589 GCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 5648 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || |||||||| || || ||||| ||||| | || Sbjct 5649 ACATTCTCAATGGTGTCACTTGGCTCCACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTC 5708 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| ||||||||||| Sbjct 5709 TTCACAAAGATCTGCATTTT 5728 >seq4 Length=156502444 Score = 104 bits (114), Expect = 5e-17 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | |||||||||||| | || ||||| || ||||| || || | ||||| Sbjct 14021106 GGAGAGAG--TGGTTGCTTTTGCCTCGGTTGAAGGAATCTTCTTCTCTGGTGCCTTTGCA 14021163 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 |||||||||||| | ||||||||||| || ||||| || | |||||||| || ||| | Sbjct 14021164 GCTATCTTTTGGCTCAAGAAAAGAGGACTGATGCCGGGTCTCACTTTCTCCAATGAACTT 14021223 Query 269246 ATAAGCAGGGACGAAG 269261 || ||| | || |||| Sbjct 14021224 ATTAGCCGTGATGAAG 14021239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151303144450556